HsaEX6020870 @ hg19
Exon Skipping
Gene
ENSG00000166579 | NDEL1
Description
nudE nuclear distribution E homolog (A. nidulans)-like 1 [Source:HGNC Symbol;Acc:17620]
Coordinates
chr17:8351868-8358205:+
Coord C1 exon
chr17:8351868-8352004
Coord A exon
chr17:8354098-8354271
Coord C2 exon
chr17:8358114-8358205
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGCAATATTTTACAGATT
3' ss Score
9.14
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GGCAACAATAGTTTCACTGGAAGACTTTGAACAAAGGCTAAACCAGGCCATTGAACGAAATGCATTTTTAGAAAGTGAACTTGATGAAAAGGAATCTTTGTTGGTCTCTGTACAGAGGTTAAAGGATGAAGCAAGAG
Seq A exon
ATTTAAGGCAAGAACTAGCAGTTCGGGAAAGACAACAGGAAGTAACTAGAAAGTCGGCTCCTAGCTCTCCAACTCTAGACTGTGAAAAGATGGACTCCGCCGTCCAAGCATCACTTTCTTTGCCAGCTACCCCTGTTGGCAAAGGAACGGAGAACACTTTTCCTTCACCGAAAG
Seq C2 exon
CTATACCAAATGGTTTTGGTACCAGTCCACTAACTCCCTCTGCTAGGATATCAGCACTAAACATCGTGGGGGATCTCTTACGGAAAGTAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166579-'7-9,'7-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.797 C2=0.290
Domain overlap (PFAM):
C1:
PF152721=BBP1_C=PD(15.6=73.3),PF104734=CENP-F_leu_zip=PD(19.4=90.0),PF048808=NUDE_C=WD(100=80.0)
A:
PF048808=NUDE_C=FE(28.7=100)
C2:
PF048808=NUDE_C=PD(22.5=93.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACAATAGTTTCACTGGAAGAC
R:
TACTTTCCGTAAGAGATCCCCCA
Band lengths:
226-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)