GgaEX1039142 @ galGal4
Exon Skipping
Gene
ENSGALG00000001163 | NDEL1
Description
Nuclear distribution protein nudE-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZKH4]
Coordinates
chr18:1688617-1691233:+
Coord C1 exon
chr18:1688617-1688753
Coord A exon
chr18:1690196-1690369
Coord C2 exon
chr18:1691142-1691233
Length
174 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTCTTGCACACTCAGACC
3' ss Score
6.27
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
GGCAACAATAGTTTCATTGGAAGACTTTGAACAAAGACTGAACCAGGCTATTGAGAGAAATGCGTTTTTGGAAAGTGAACTGGATGACAAGGAGTCATTGCTAGTTTCTGTACAGAGATTAAAGGATGAAGCGAGAG
Seq A exon
ACCTGCGGCAGGAGCTGGCAGTACGGGAAAGGCAGCAGGAAGTCACCCGCAAGTCTGCGCCGAGCTCTCCAACTCTAGACTGTGAAAAGATGGATTCAGCTGTCCAGGCGTCTCTCTCCTTACCAGCTACGCCTGTTGGAAAAGGATCTGAAAATAGTTTTCCTTCCCCAAAAG
Seq C2 exon
CTATACCAAATGGATTTGGTACAAGCCCTCTTACTCCTTCAGCTAGAATATCTGCACTCAACATCGTGGGAGATCTCTTACGGAAAGTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001163-'19-9,'19-7,20-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.870 C2=0.301
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=PU(21.7=87.2)
A:
PF048808=NUDE_C=FE(30.7=100)
C2:
PF048808=NUDE_C=FE(15.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACAATAGTTTCATTGGAAGACT
R:
CCCCACTTTCCGTAAGAGATCT
Band lengths:
229-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]