RnoEX6047855 @ rn6
Exon Skipping
Gene
ENSRNOG00000004139 | Ndel1
Description
nudE neurodevelopment protein 1-like 1 [Source:RGD Symbol;Acc:621235]
Coordinates
chr10:55423343-55430530:-
Coord C1 exon
chr10:55430394-55430530
Coord A exon
chr10:55426208-55426381
Coord C2 exon
chr10:55423343-55423434
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGCAACATTTTGCAGATT
3' ss Score
8.52
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GGCAACAATAGTTTCACTGGAAGACTTTGAACAAAGGCTAAATCAGGCCATTGAACGAAATGCATTTTTAGAAAGTGAACTTGATGAAAAGGAATCTTTGTTGGTCTCAGTACAGAGGTTAAAGGATGAAGCAAGAG
Seq A exon
ATTTAAGGCAAGAGCTAGCAGTTCGGGAACGGCAACAGGAAGTGACCCGAAAGTCTGCTCCCAGCTCTCCAACTCTGGACTGTGAGAAGATGGATTCTGCCGTCCAGGCTTCGCTCTCCTTGCCTGCAACGCCTGTGGGGAAAGGCACAGAAAACAGTTTTCCTTCACCAAAAG
Seq C2 exon
CTATACCAAATGGCTTTGGAACCAGTCCACTAACTCCTTCTGCTAGGATATCAGCACTAAACATCGTGGGAGATCTCTTGCGGAAAGTAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004139-'13-11,'13-9,15-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.860 C2=0.306
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=PU(20.3=87.2)
A:
PF048808=NUDE_C=FE(28.7=100)
C2:
PF048808=NUDE_C=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACAATAGTTTCACTGGAAGAC
R:
TACTTTCCGCAAGAGATCTCCCA
Band lengths:
226-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]