BtaEX6100699 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006395 | TUBGCP2
Description
Bos taurus tubulin, gamma complex associated protein 2 (TUBGCP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001098149]
Coordinates
chr26:25956149-25957417:+
Coord C1 exon
chr26:25956149-25956292
Coord A exon
chr26:25956485-25956613
Coord C2 exon
chr26:25957254-25957417
Length
129 bp
Sequences
Splice sites
3' ss Seq
CATTCCTCCCGACCCCCAAGAGA
3' ss Score
2.87
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GCCTCCACCATTGACGACGTGCTGGGGCACCATGCCAGCTTCCTGGATGGCTGCCTCAAGGACTGCATGCTGACCAACCCCGAGCTGCTGCGCGTCTTCTCCAAGCTCATGTCCGTGTGCGTCATGTTCACCAACTGCATGCAG
Seq A exon
AGATTTACGCAGAGCATGAAACTGGACAGCGAGCTGGGCCGCCTGACGCTGGAGCACGGCACGATGCAGGGGCCTCCCACAGAGGCCGAGCGGGCCGAGGAGCGCACCCGCAAGGAGCTCGCCCGCAAG
Seq C2 exon
TGCCTGGCTGAGCATGTGGACGCGCCACAGCTGGCCTCCAGCTTCGAGGCCACCATCAATAAATTTGATAAGAATTTCTCAGCTCACCTGCTCGACCTCCTGGCCCGGCTGAGCGTCTACAGCACCAGCGACTGCGAGCACGGCATGGCCAGTGTCATCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006395-'23-28,'23-25,25-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.535 C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=PD(4.2=45.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGACTGCATGCTGACCAA
R:
CTGGAGATGACACTGGCCATG
Band lengths:
252-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]