HsaEX0068325 @ hg19
Exon Skipping
Gene
ENSG00000130640 | TUBGCP2
Description
tubulin, gamma complex associated protein 2 [Source:HGNC Symbol;Acc:18599]
Coordinates
chr10:135094777-135096725:-
Coord C1 exon
chr10:135096582-135096725
Coord A exon
chr10:135095727-135095846
Coord C2 exon
chr10:135094777-135094940
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTGCGACTCTCCCCCCCTAGAAA
3' ss Score
9.23
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GCCTCCAACATTGACGACGTCCTTGGCCACCACACAGGCTTCCTGGACACCTGCCTGAAGGACTGCATGCTCACCAACCCCGAGCTGCTGAAGGTCTTCTCCAAGCTCATGTCTGTGTGCGTCATGTTCACCAACTGCATGCAG
Seq A exon
AAATTTACACAGAGCATGAAATTAGATGGCGAGCTGGGCGGGCAGACGCTGGAGCACAGCACCGTCCTGGGGCTGCCCGCAGGGGCCGAGGAGCGGGCCCGGAAGGAGCTCGCCAGGAAG
Seq C2 exon
CACCTGGCTGAGCACGCAGACACTGTGCAGCTGGTGTCCGGCTTCGAGGCCACCATCAACAAGTTTGACAAGAACTTCTCAGCCCACCTGCTGGACCTCCTGGCCCGGCTGAGCATCTATAGCACCAGTGACTGTGAGCACGGCATGGCCAGCGTCATCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130640_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.100 C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=PD(4.2=45.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGGACACCTGCCTGAAG
R:
TGCTCACAGTCACTGGTGCTA
Band lengths:
245-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)