RnoEX0095179 @ rn6
Exon Skipping
Gene
ENSRNOG00000018137 | Tubgcp2
Description
tubulin, gamma complex associated protein 2 [Source:RGD Symbol;Acc:1309597]
Coordinates
chr1:212334553-212336576:-
Coord C1 exon
chr1:212336433-212336576
Coord A exon
chr1:212335685-212335813
Coord C2 exon
chr1:212334553-212334716
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCCTCATGACTCACCTTTAGAAA
3' ss Score
5.89
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GCCTCCAACATTGACGATGTCCTTGGCCACCACACAAGTTTCCTTGACAACTGCCTGAAGGACTGCATGCTGACCAACCCTGAGCTGCTGAAGGTTTTCTCCAAGCTCATGTCCGTGTGCGTCATGTTCACCAACTGTATGCAG
Seq A exon
AAATTTACACAGAGTATGAAACTGGACAGTGAACTAGGCCGTCTGACACTGGATCAGGGTAGTGTGCAGGGGCCACCCCCAGAGAGTGAGCGGATTGATGATCGTCCCCGGAAGGAGCCTACCAGGAAG
Seq C2 exon
CACCTGCCTGAGCATGTGGACACTCCTCAGCTGTCCTCCGGCTTCGAGGCCACCATCAACAACTTTGACAAAAACTTCTCTGCCCATCTTCTTGATTTGCTGGCCCGACTAAGTGTCTACAGCACCAGTGACTGTGAACACGGCATGGCCAGTGTCATCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018137-'20-25,'20-22,21-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.640 C2=0.227
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=PD(4.2=45.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACGATGTCCTTGGCCAC
R:
CACTTAGTCGGGCCAGCAAAT
Band lengths:
250-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]