DreEX0082350 @ danRer10
Exon Skipping
Gene
ENSDARG00000013079 | tubgcp2
Description
tubulin, gamma complex associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-031118-150]
Coordinates
chr12:9170512-9176091:+
Coord C1 exon
chr12:9170512-9170655
Coord A exon
chr12:9172596-9172715
Coord C2 exon
chr12:9175928-9176091
Length
120 bp
Sequences
Splice sites
3' ss Seq
AATGTTGGATTGTTTTGCAGCGG
3' ss Score
7.77
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GCGTCCAACATTGATGATGTGCTGTGTCACCACACCAGTTTCCTGGATAACTGTTTGAAAGACTGTATGCTCACCAACCCTGAACTGCTCCGGATCTTCTCCAAGCTCATGTCTGTCTGTGTCATGTTTACCAACTGTATGCAG
Seq A exon
CGGTTCACACAAAGCATGAGGATAGACAGCGAGATGAAGCGTCTGACTCTTGAGCACGGCACTATAGAAGGCACTTCAGTCCTGGCTGACGAGGCCGAGAAAAAAAGACTGGCCTCTAAA
Seq C2 exon
TTTCTAGCTGAGCATGTGGATGCTCTTCAGTCTGACTCCGGGTTCGAGGGGACCATCAGCAAGTTTGACAGTAACTTCAGCACTTTATTGCTGGATCTTTTGGACAAGCTCAGCATTTACAGCACCAATGACTGTGAACACAGCATGATCAACATCATCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013079-'15-16,'15-14,16-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=PD(4.2=45.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCACCACACCAGTTTCCT
R:
TGGTGCTGTAAATGCTGAGCT
Band lengths:
248-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]