MmuEX0049891 @ mm9
Exon Skipping
Gene
ENSMUSG00000025474 | Tubgcp2
Description
tubulin, gamma complex associated protein 2 [Source:MGI Symbol;Acc:MGI:1921487]
Coordinates
chr7:147182681-147184811:-
Coord C1 exon
chr7:147184668-147184811
Coord A exon
chr7:147183871-147183999
Coord C2 exon
chr7:147182681-147182844
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCCTCATGACTCACCTTTAGAAA
3' ss Score
5.89
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GCCTCCAACATTGACGATGTCCTTGGCCACCACACAAGCTTCCTTGACAACTGCCTGAAGGACTGCATGCTGACCAACCCTGAGCTGCTGAAGGTTTTCTCCAAGCTCATGTCCGTATGCGTCATGTTTACCAACTGTATGCAG
Seq A exon
AAATTTACACAGAGTATGAAACTGGACAGTGAGCTAGGCCGTCTGACACTGGATCAGGGTAGTGTGCAGGGGCCACCCACAGAGACTGAACGGATTGAGGATCGCCCCCGGAAGGAGCTTACCAGGAAG
Seq C2 exon
CATCTGTCTGAGCATGTGGATGCTCCTCAGCTGGCCTCTGGTTTCGAGGCCACCATCAACAACTTTGACAAAAACTTCTCTGCCCATCTTCTTGATTTGCTGGCCCGACTAAGTGTCTACAGCACCAGTGACTGCGAACATGGCATGGCCAGTGTCATCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025474_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.581 C2=0.073
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=PD(4.2=45.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACGATGTCCTTGGCCAC
R:
CACTTAGTCGGGCCAGCAAAT
Band lengths:
250-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: