HsaEX0068325 @ hg38
Exon Skipping
Gene
ENSG00000130640 | TUBGCP2
Description
tubulin gamma complex associated protein 2 [Source:HGNC Symbol;Acc:HGNC:18599]
Coordinates
chr10:133281273-133283221:-
Coord C1 exon
chr10:133283078-133283221
Coord A exon
chr10:133282223-133282342
Coord C2 exon
chr10:133281273-133281436
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTGCGACTCTCCCCCCCTAGAAA
3' ss Score
9.23
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GCCTCCAACATTGACGACGTCCTTGGCCACCACACAGGCTTCCTGGACACCTGCCTGAAGGACTGCATGCTCACCAACCCCGAGCTGCTGAAGGTCTTCTCCAAGCTCATGTCTGTGTGCGTCATGTTCACCAACTGCATGCAG
Seq A exon
AAATTTACACAGAGCATGAAATTAGATGGCGAGCTGGGCGGGCAGACGCTGGAGCACAGCACCGTCCTGGGGCTGCCCGCAGGGGCCGAGGAGCGGGCCCGGAAGGAGCTCGCCAGGAAG
Seq C2 exon
CACCTGGCTGAGCACGCAGACACTGTGCAGCTGGTGTCCGGCTTCGAGGCCACCATCAACAAGTTTGACAAGAACTTCTCAGCCCACCTGCTGGACCTCCTGGCCCGGCTGAGCATCTATAGCACCAGTGACTGTGAGCACGGCATGGCCAGCGTCATCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130640-'56-61,'56-58,58-61
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.114 C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=PD(4.2=45.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGGACACCTGCCTGAAG
R:
TGCTCACAGTCACTGGTGCTA
Band lengths:
245-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development