GgaEX1061240 @ galGal4
Exon Skipping
Gene
ENSGALG00000003526 | TUBGCP2
Description
gamma-tubulin complex component 2 [Source:RefSeq peptide;Acc:NP_001006496]
Coordinates
chr6:8882447-8884084:-
Coord C1 exon
chr6:8883941-8884084
Coord A exon
chr6:8883249-8883377
Coord C2 exon
chr6:8882447-8882610
Length
129 bp
Sequences
Splice sites
3' ss Seq
CAACCCTCTGCCCTTTCCAGAGG
3' ss Score
8.4
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GCTTCTAATATTGATGATGTTCTGAGCCACCACACGAGCTTTCTGGACAACTGCCTGAAGGACTGCATGCTGACCAACCCCGAGCTGCTGAAGATCTTCTCCAAACTGATGTCTGTCTGTGTCATGTTCACAAACTGCATGCAG
Seq A exon
AGGTTCACCCAGAGCATGAAGCTGGATAGCGAGATGGACCGGCTCAGCCTAGAGCATGGCACGATGCTGGGCCCACCAACAGAGGAAGAGCGTGCTGAAGAGACCGCAAAGAAGAAGCTGACTAGCAAG
Seq C2 exon
CTTTTAGCAGAGCATGCTGACAACCTCCATTTGACATCTGGCTTTGAAGCAACGATCAACAAGTTTGATACTAATTTCTCAACGCATCTGCTGGATCTGTTGGACCGGCTAAGCATTTACAGCACCAATGACTGCGAGCACAGCATGCTTAACATCATCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003526-'23-26,'23-25,24-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.535 C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=PD(4.2=45.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGCTTTCTGGACAACTGC
R:
CTCGCAGTCATTGGTGCTGTA
Band lengths:
249-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]