GgaEX1061240 @ galGal3
Exon Skipping
Gene
ENSGALG00000003526 | Q5ZKY5_CHICK
Description
NA
Coordinates
chr6:10465475-10467112:-
Coord C1 exon
chr6:10466969-10467112
Coord A exon
chr6:10466277-10466405
Coord C2 exon
chr6:10465475-10465638
Length
129 bp
Sequences
Splice sites
3' ss Seq
CAACCCTCTGCCCTTTCCAGAGG
3' ss Score
8.4
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GCTTCTAATATTGATGATGTTCTGAGCCACCACACGAGCTTTCTGGACAACTGCCTGAAGGACTGCATGCTGACCAACCCCGAGCTGCTGAAGATCTTCTCCAAACTGATGTCTGTCTGTGTCATGTTCACAAACTGCATGCAG
Seq A exon
AGGTTCACCCAGAGCATGAAGCTGGATAGCGAGATGGACCGGCTCAGCCTAGAGCATGGCACGATGCTGGGCCCACCAACAGAGGAAGAGCGTGCTGAAGAGACCGCAAAGAAGAAGCTGACTAGCAAG
Seq C2 exon
CTTTTAGCAGAGCATGCTGACAACCTCCATTTGACATCTGGCTTTGAAGCAACGATCAACAAGTTTGATACTAATTTCTCAACGCATCTGCTGGATCTGTTGGACCGGCTAAGCATTTACAGCACCAATGACTGCGAGCACAGCATGCTTAACATCATCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003526-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.535 C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=PD(4.2=45.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGCTTTCTGGACAACTGC
R:
CTCGCAGTCATTGGTGCTGTA
Band lengths:
249-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]