BtaINT0027422 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017913 | BUB3
Description
Bos taurus budding uninhibited by benzimidazoles 3 homolog (yeast) (BUB3), mRNA. [Source:RefSeq mRNA;Acc:NM_001076177]
Coordinates
chr26:43285999-43288958:+
Coord C1 exon
chr26:43285999-43286215
Coord A exon
chr26:43286216-43288437
Coord C2 exon
chr26:43288438-43288958
Length
2222 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
ATGTATTTTCTTCATTGCAGGTC
3' ss Score
10.93
Exon sequences
Seq C1 exon
GTGGTTCTGATGGATTTGTAAATATTTGGGATCCATTTAACAAAAAGCGACTGTGCCAGTTCCATCGGTACCCCACCAGCATCGCCTCACTTGCCTTCAGTAATGATGGGACCACGCTTGCAATAGCATCATCGTATATGTATGAAATGGATGACACGGAACATCCTGAAGATGGTATCTTCATTCGCCAAGTGACAGATGCAGAAACAAAACCCAA
Seq A exon
GTGAGTATGCTTCACCTGTATTTGAGCCTTTTCTTGCATTCAACCCAGGATTTATTAATTTTTCTAAATTCATGAATAGCATTGTTGATGCCTGTTTGATATTACAGCTGACTCTAGGGCTGGAGTTGATTTTATCTTGTTCTCCCAAGCTTTCAATATCCGTAGGTTGATAGACGTCTGATGGATAAAATTGTGCCTAGTTGTTTTGTAGAGAAGAATGTCAAACTCTCATTCTTCTTGAATAGGCACTATTATTTGAATCTCTGGAGTTATTACTAGCTCATTGCTTCAAAATTAAGTTGAGGAATTCAAGAATAATTTATTTTAGCAAATTCTATTTAAGATATTTAAGAATTTGAACTGCCAAAAATCTTTCCTCTCCACAGAGGTTGTTTCTGTAATATTTACACAGAATGAAATGACCTTCAGGTCTTACTGGAAATTCAGAGTAATATGGCCTTGCTTGGAATACTAGATTTCCTTAGTTTTGAAATTTCTGTAGGTGTCTTTGGCTCTTGGGTGTAACTGTTGACAGGGAAGAACCATTTACATTTTCTCGGTACATGGGGCAGAGCTTTTTACTTGAGCCAGACTTGAGGGAAACCTGATACCTGGACACTTGTTTGACCATAAAATACCAGCCCCCAAGAGTCTTGGTCCTGCTCCTTGTCCCTCTCTCCTCAGGCCCTGGAAGGAAGTCCTCAGTAAATATTTATGGAATAGCTGACTGTTTCCAGGATCCCTGTACTCTTCTGAATTAGAATGGCATAGAGGGCCCTTGCTGAGTTGCTGGAGTCCCTGAGAGAGGGCAGAGTGTGAAGTGTTCAGTACCGGGTGTGCCTTCACAGTTTGTCTTTGGAAAAGGCGTGGCGTGTGAAGCCTGGTGGATAAAGGGCTGGGTTTGCGTTTATCTCTCGCTTCTGTGTCTCTTGTCCTGGCCGGCCGTTTTGATCTCATGCTCTTCTTTTTTCTTTTGAACTTGTAGGTCACCATGTACTTGACAAGATTTCATTTACTTAAGTGCCATGTTGATGATAATAAAACAATTCGTACTCCCCAATGGTGGATATATTACTATTAACAAAGAAGCCAGGGAACATTTTTTAATTTTAATATTATAAGAACCTGAAAATATTGGAAAAGAGGTTTTTTTATTGTTTGTTTTTTTTAAACACTTTCTTTAGCGCATGAGATGGTTTGATGGTTTTTCTGCATTTAAAGGTATTTGGGCAAACAGAAGGGGAGGGCAGCAGCAGCACTTCTGAGAATCAGTTTTGACCTTGATTTTTGTTTCCACTGCGGAAATAAATGTTTGTAAATAAATGTAGGTGATAAAGCCCCCTTTGCATTCTTTCTGGGCCTTAAATGGTAGAGAAGAAGGCTCTTGAGCCATTTGTTTCTCTTGCTGGTTATAGTTGCTAATTCTAAAGCTGCTTCAGACTGCCTCATGAGGAGGTTAATCTACAATTAAACAATATTTCCTCTCGGCCGTCCATTATTTTCTGAAGCAGATGGGTCATCATTTCCTGGGCTGTGAAACAAAGCGAGGTTAAGGTTAGACTCTGGGGAATCAGCTCGTTTTCAATCTTATTAGGGTGCAGGAGGAAAACTAATAAGAAAACCTCCTAACATCATTTTGTGACTGTAAACAATTATTTATTAGCAAACAATTGATCCCAGAAGGGCAAATTGTTTGAGTCAGTAATGAGCTGAGAAAAGACAGAGCATATCTGTGTATTTGGAAAAATAATTGTAACGTAATTGCAGTACATTTAGACAGGCATCTATTTGGACCTGTTTCTATCTCTAAATGAATTTTTGGAAACATTAATGAGGTTTACATATTTCTCTGACATTTATATAGTTCTCATGTCCATTTCAGTTGCCCAGCCGCTGGTGATTAAGGTTAAAAAGAAAAAAATTATAGTGAGAATGAGATTCATTTCAATGTAATGCCCTGAAGCAGAACATGAACTTAGCTTGGCCTATTCTAGGTAGTTCCAAATCGTTTTTTTGTTGTCACACTTTTTGTTTTTTTATTTATATTATTTGCAAATGTATGTATCTGAATGGTACTTGGACCTTTACTGAAATTTGTTTCATCCATGATGTATTTTAAAAAATTTCTTTTGCTACAGAGAGAGGTCTTATTTGTAAGTATTTTAGTGAAAACTTAGTGTAAATCTGAACCCATCTTTTGAAATGTATTTTCTTCATTGCAG
Seq C2 exon
GTCCACCTAACCATCTCGTGAAAGTGGTTTCTCTATGGAAAGCTTGTTTTCCTTCTTACCAATACATGATTGTCCCTTAAGGGATGCGTTTTAGTCATTGTGGACACATTGTTTAGTATGTGAATTTCTCTGTTATCTTGGTGTGCCCTTTCCTCCTGACTGTAGGATGAGGAGTCTGTGTGTCCTTGTGCAGTAGTCTGAAGAATTGTTTTTCCCTCAGCAAGCCCAGTTGCTGTGTATGTGCAGCTTGAGGTCTTTCTGTAAAATAACCTAAACCTGTTATTTCCATGCTGTCTAATAAATCAGAGATTCAAAACCCTTAAATGTTGGATGTTTTTAAATGTTGGTAATTAATGTAATTTACTTCGTAAAAAGCCTTCTGTAAAGCAAACCTCCCTTCATCAGGGGGCCGGGTGGGGATGACATTGTACCTTTCGGTCCACACTGCCTTGTTTAATTATGTCTATTTGGATGTACTTTGGGGATTCAGTCTTGAATAAAGTGATCTGTTGGAGTTCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017913:ENSBTAT00000057027:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(32.3=13.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]