MmuINT0026398 @ mm10
Intron Retention
Gene
ENSMUSG00000066979 | Bub3
Description
BUB3 mitotic checkpoint protein [Source:MGI Symbol;Acc:MGI:1343463]
Coordinates
chr7:131568505-131571892:+
Coord C1 exon
chr7:131568505-131568721
Coord A exon
chr7:131568722-131570878
Coord C2 exon
chr7:131570879-131571892
Length
2157 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CTGTGTTTTCTTCATTGCAGGTC
3' ss Score
12.17
Exon sequences
Seq C1 exon
GTGGTTCGGATGGATTCGTCAATATTTGGGACCCATTTAACAAGAAGCGCCTGTGCCAGTTCCATCGGTACCCCACCAGCATCGCTTCCCTTGCCTTCAGTAATGACGGAACTACGCTTGCAATAGCATCGTCATATATGTATGAGATGGATGACACCGAGCATCCTGAAGATGGTATCTTCATTCGCCAAGTGACAGACGCAGAAACAAAGCCCAA
Seq A exon
GTGAGTAGGCTTCACCTGGATTGAAGCCTTTTCTTGCATTCAACCCAGGACTTATTAATTTTTCTAAATTCATGAATAGCATTGTTGATGCCTGCTCGATATTACAGCTGACTGTAGGGTTGGAGTTGATTTTATCTTGTTCTCCCAAGCTTTCAATATCCGCAGGTTGATAGACGTCTGATGGATGAAACTGTGCCCAGTTGTTTGTAGAGAAGAATGTCAAGCCCTCGTGCTCCTTGAATAGGCTCTATTATTTGAACCTGTGGACTTTACTACTACCTCATTGCTTTAAAATTAAGTTGAGGAATTCAAGAATAATTTAGTAAATTATATTTAAGATATTTAAACTGCCAAAAAATTCTTCCTTCTCCAGCCATTGTTTCTGTAATATTTACACAAGTGAATGGCCTCTGGGTCACACTGGAAACCCAGAGTAATATGGCCTCGCCTAGCATAGCAAATTTCCTTCCTTTTGACATGTTCAGGAGGTGTAGGTGTAGGCTCTGGGTTCTAAGGATTGTCTGCAAGGGCCCATCTCCATGTTTTGGCAGCAGCAGGACAAAGCCTTTTACCCAGTGGCCTCTCCTGGGCTGAGAATGCAGAGGCTTGGGCACAGATTGTACCGTGCAGTACCTACCCCATGTGACTTGTCCTGTCCTTACTCTGTTCTCAGGCCTTACAGGGAAATCCTGGGTGAATAGTTTCCGGATAAATAAAGATGTATGGGACTTCTGTAATTTTCTGAAGTCCCCTTGCTAAATTGGTTGGGCCTCTGTAGGATCAGAGCATTTAAACAAGGAGAAATGTGTGTGCTTTTACAATGTGTAGAGTCTTAGAATGTGGAGTCTGTTGGAAAAGCCTGCACTTGCATTTGATATATTTGGTAATTTTTGTCCTGGCCATTTTAATCTTTTTTTTTTTTTTTTTGAACTTGTTCTTGACAAGATTTCATGTTCGTAAATGCCATGTTGATGATGATGAAACAATTGGTTCTTCCCAGAGGTGGATTCATAACTATTAATAAAGAAACCAGGAAAATACTAATTTTGATTTAAAAAAAAAAAAAGAACCTGAAAATAATGAAAAAGAGGTTTTTATTTATTTATTTATTTATTTAAAATGAAAACTTAAGTGCACAAGCTGGTTTGATGCTTTGCTTACATTAAAGGTATTTGGGCAAATCAGACTTGAGAGCAGTGGCTGCACTTTTGAGAATCAGTTTTGACCTTGGGTTGTTTCTGCTGTGGAAATAAGTGATTGTAAATAGCAGTTCTATAAATCCCTTTGTGTTCTCTCTGTCCTTAAATGGTGGAGGAGAAGGCTCTGGGGCCACTGCTTTCGTTGCTGGTGATAGTTGGTAATGCGAAAGCTGCTTCAGACTGCCTCATGAGGAGGTTAATCTACAATTAAACAATATTTCCTCTCGGCTGTCCATTATTTTCTGAAGCAGATGGTTCATCATTTCCTGGGCTGCTAAACAAAGCGAGGTTAAGGTTAGACTCGCGGGAATCAGCTAGTTTTCAATCTTATTAGACTGCAGAAGGAAAACTAATAAGAAAAGCTCCTAACATCATCTTGTGACTGTAAACAATTATTTATTAGCAAACAATTGATCCCAGAAGGGCAAATTGTTTGAGTCAGTAATGAGCTGAGAAAAGACAGAGCGTATCTGTGCATTTGGGAAAGTCATTGTAACGTAATTGCAGTGCATTTAGACAGGCATCTATCTGGACCTGTTTCTATCTCTAAATGAATTTTTGGAAACATTAATGAGGTTTACATATTTCTCTGACATTTATATAGTTCTCATGCCCATTGCAGTTGCCCAGCCGCTGGTGATTAAAGGTTAAGAAGAAAAAATTATAGTGAGAATGAGATTCATTTAGATGTAATGTCTTGTAGCAGAACACGAACTTAGCTTGGCCTGTTTCAAGTAGTTCCAGTGTTTCTGTTGTCAGACTTGTTATTTTTAATGCGTAAATTTGTAAATCTCTGAAAAGGACATGGACCTTTATGAAGTTTATTTTACCCATAGTGTATTAAAAAAAAAAATTCTTTTGTTATGGAGAGAAGTCTTATTTTTATTTTGTAAGATTTTCAGTGAGAAATTAATGTGCTATCTACGTGTATCCTTGAACTGTGTTTTCTTCATTGCAG
Seq C2 exon
GTCCACGTAATCTGGGGAAAGCAGTTTCTCTGGAAAAGCTTTGCTTCCTACAAACACGCGCTTTCCCTGAGGCCTGCTTGCAGCCATTGGACACTTGGTCTAGTGTGTGGATTTCTATGTCTTCTGTCGTAACAGAATTGTCTCTGTGCCCTGTGATTGTTTTGGGTAGGGACGCTTTGTATCCTTGTACAGTAGTCTTGACGATTCTCCTCCCCTACGCCATTTTTGTTTGTGTTTGCTATCTAAAACTGTTATATTTTTCTGTTGTCTAATAAATCAGAGATTTGGAACTTTTAAAAGTTGGGTGTTTGTAAACATTTTGGTAGTGTCATTTATTGCATAACAAGGCTTTTCTTAGGCAAAGTACTCTTTGTCATTAGAGGTGTCATTTGACTGAATGTACCATGCCTTATTTATTATATCTGCTCTTGTACCAGGGGGTCAGCCCTGGGTAAAGGAATCCACTTGACTTCTTTCAGCCAGTTTTTGCTCCTGTTTCTTTGGAGGCTCAGTGAGGCCTGGGAGCCAGCTCTGCAGCTTCTCAAGATGGGCACTGACCGGCAGCATCTGCGTGGCTGCTAGCAGTGCCAGTGTGGGTAGGGCTCATGCTTCCGTGGGCTGACGATACCATCCTCTGTAGACAGAGCCAAAGGGCAGGCCCCTCTGGACTTAGCCATCAGCTGCTATGTCACTGAAGCCCTCCGGACGATAAATGGTGTACCAGCCAGGAGCTACTGGTGGGATTGGTCTTGTGGTGTAGTCGTATGCTTTTTAAAGTCATAACCACGTGAGCATAAATTTCAAACATTGTATAACTTAAAAAGAGAATGGGCCTTGTTAAAGGTGACCAAATTAAAGCCGTGTTATGGACTTGTGTTTGAAGTGGTATAGAGAGCTGCTGATGGTTCCGTTTGGCTGTCCCTCTGTCCCTAAATGTGTCTCCTACCCCTTGTGTGCCACCTGTGCAGCTCACCCTCTCAATTTGCCTGTTTATTAAAGTTACCTTTGCTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066979:ENSMUST00000084502:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(32.3=13.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types