MmuINT0026398 @ mm9
Intron Retention
Gene
ENSMUSG00000066979 | Bub3
Description
budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1343463]
Coordinates
chr7:138712019-138715412:+
Coord C1 exon
chr7:138712019-138712235
Coord A exon
chr7:138712236-138714392
Coord C2 exon
chr7:138714393-138715412
Length
2157 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CTGTGTTTTCTTCATTGCAGGTC
3' ss Score
12.17
Exon sequences
Seq C1 exon
GTGGTTCGGATGGATTCGTCAATATTTGGGACCCATTTAACAAGAAGCGCCTGTGCCAGTTCCATCGGTACCCCACCAGCATCGCTTCCCTTGCCTTCAGTAATGACGGAACTACGCTTGCAATAGCATCGTCATATATGTATGAGATGGATGACACCGAGCATCCTGAAGATGGTATCTTCATTCGCCAAGTGACAGACGCAGAAACAAAGCCCAA
Seq A exon
GTGAGTAGGCTTCACCTGGATTGAAGCCTTTTCTTGCATTCAACCCAGGACTTATTAATTTTTCTAAATTCATGAATAGCATTGTTGATGCCTGCTCGATATTACAGCTGACTGTAGGGTTGGAGTTGATTTTATCTTGTTCTCCCAAGCTTTCAATATCCGCAGGTTGATAGACGTCTGATGGATGAAACTGTGCCCAGTTGTTTGTAGAGAAGAATGTCAAGCCCTCGTGCTCCTTGAATAGGCTCTATTATTTGAACCTGTGGACTTTACTACTACCTCATTGCTTTAAAATTAAGTTGAGGAATTCAAGAATAATTTAGTAAATTATATTTAAGATATTTAAACTGCCAAAAAATTCTTCCTTCTCCAGCCATTGTTTCTGTAATATTTACACAAGTGAATGGCCTCTGGGTCACACTGGAAACCCAGAGTAATATGGCCTCGCCTAGCATAGCAAATTTCCTTCCTTTTGACATGTTCAGGAGGTGTAGGTGTAGGCTCTGGGTTCTAAGGATTGTCTGCAAGGGCCCATCTCCATGTTTTGGCAGCAGCAGGACAAAGCCTTTTACCCAGTGGCCTCTCCTGGGCTGAGAATGCAGAGGCTTGGGCACAGATTGTACCGTGCAGTACCTACCCCATGTGACTTGTCCTGTCCTTACTCTGTTCTCAGGCCTTACAGGGAAATCCTGGGTGAATAGTTTCCGGATAAATAAAGATGTATGGGACTTCTGTAATTTTCTGAAGTCCCCTTGCTAAATTGGTTGGGCCTCTGTAGGATCAGAGCATTTAAACAAGGAGAAATGTGTGTGCTTTTACAATGTGTAGAGTCTTAGAATGTGGAGTCTGTTGGAAAAGCCTGCACTTGCATTTGATATATTTGGTAATTTTTGTCCTGGCCATTTTAATCTTTTTTTTTTTTTTTTTGAACTTGTTCTTGACAAGATTTCATGTTCGTAAATGCCATGTTGATGATGATGAAACAATTGGTTCTTCCCAGAGGTGGATTCATAACTATTAATAAAGAAACCAGGAAAATACTAATTTTGATTTAAAAAAAAAAAAAGAACCTGAAAATAATGAAAAAGAGGTTTTTATTTATTTATTTATTTATTTAAAATGAAAACTTAAGTGCACAAGCTGGTTTGATGCTTTGCTTACATTAAAGGTATTTGGGCAAATCAGACTTGAGAGCAGTGGCTGCACTTTTGAGAATCAGTTTTGACCTTGGGTTGTTTCTGCTGTGGAAATAAGTGATTGTAAATAGCAGTTCTATAAATCCCTTTGTGTTCTCTCTGTCCTTAAATGGTGGAGGAGAAGGCTCTGGGGCCACTGCTTTCGTTGCTGGTGATAGTTGGTAATGCGAAAGCTGCTTCAGACTGCCTCATGAGGAGGTTAATCTACAATTAAACAATATTTCCTCTCGGCTGTCCATTATTTTCTGAAGCAGATGGTTCATCATTTCCTGGGCTGCTAAACAAAGCGAGGTTAAGGTTAGACTCGCGGGAATCAGCTAGTTTTCAATCTTATTAGACTGCAGAAGGAAAACTAATAAGAAAAGCTCCTAACATCATCTTGTGACTGTAAACAATTATTTATTAGCAAACAATTGATCCCAGAAGGGCAAATTGTTTGAGTCAGTAATGAGCTGAGAAAAGACAGAGCGTATCTGTGCATTTGGGAAAGTCATTGTAACGTAATTGCAGTGCATTTAGACAGGCATCTATCTGGACCTGTTTCTATCTCTAAATGAATTTTTGGAAACATTAATGAGGTTTACATATTTCTCTGACATTTATATAGTTCTCATGCCCATTGCAGTTGCCCAGCCGCTGGTGATTAAAGGTTAAGAAGAAAAAATTATAGTGAGAATGAGATTCATTTAGATGTAATGTCTTGTAGCAGAACACGAACTTAGCTTGGCCTGTTTCAAGTAGTTCCAGTGTTTCTGTTGTCAGACTTGTTATTTTTAATGCGTAAATTTGTAAATCTCTGAAAAGGACATGGACCTTTATGAAGTTTATTTTACCCATAGTGTATTAAAAAAAAAAATTCTTTTGTTATGGAGAGAAGTCTTATTTTTATTTTGTAAGATTTTCAGTGAGAAATTAATGTGCTATCTACGTGTATCCTTGAACTGTGTTTTCTTCATTGCAG
Seq C2 exon
GTCCACGTAATCTGGGGAAAGCAGTTTCTCTGGAAAAGCTTTGCTTCCTACAAACACGCGCTTTCCCTGAGGCCTGCTTGCAGCCATTGGACACTTGGTCTAGTGTGTGGATTTCTATGTCTTCTGTCGTAACAGAATTGTCTCTGTGCCCTGTGATTGTTTTGGGTAGGGACGCTTTGTATCCTTGTACAGTAGTCTTGACGATTCTCCTCCCCTACGCCATTTTTGTTTGTGTTTGCTATCTAAAACTGTTATATTTTTCTGTTGTCTAATAAATCAGAGATTTGGAACTTTTAAAAGTTGGGTGTTTGTAAACATTTTGGTAGTGTCATTTATTGCATAACAAGGCTTTTCTTAGGCAAAGTACTCTTTGTCATTAGAGGTGTCATTTGACTGAATGTACCATGCCTTATTTATTATATCTGCTCTTGTACCAGGGGGTCAGCCCTGGGTAAAGGAATCCACTTGACTTCTTTCAGCCAGTTTTTGCTCCTGTTTCTTTGGAGGCTCAGTGAGGCCTGGGAGCCAGCTCTGCAGCTTCTCAAGATGGGCACTGACCGGCAGCATCTGCGTGGCTGCTAGCAGTGCCAGTGTGGGTAGGGCTCATGCTTCCGTGGGCTGACGATACCATCCTCTGTAGACAGAGCCAAAGGGCAGGCCCCTCTGGACTTAGCCATCAGCTGCTATGTCACTGAAGCCCTCCGGACGATAAATGGTGTACCAGCCAGGAGCTACTGGTGGGATTGGTCTTGTGGTGTAGTCGTATGCTTTTTAAAGTCATAACCACGTGAGCATAAATTTCAAACATTGTATAACTTAAAAAGAGAATGGGCCTTGTTAAAGGTGACCAAATTAAAGCCGTGTTATGGACTTGTGTTTGAAGTGGTATAGAGAGCTGCTGATGGTTCCGTTTGGCTGTCCCTCTGTCCCTAAATGTGTCTCCTACCCCTTGTGTGCCACCTGTGCAGCTCACCCTCTCAATTTGCCTGTTTATTAAAGTTACCTTTGCTGCCAGTTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066979-Bub3:NM_009774:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(32.3=13.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: