RnoINT0027090 @ rn6
Intron Retention
Gene
ENSRNOG00000020643 | Bub3
Description
BUB3 mitotic checkpoint protein [Source:RGD Symbol;Acc:1306654]
Coordinates
chr1:203534879-203535698:+
Coord C1 exon
chr1:203534879-203534995
Coord A exon
chr1:203534996-203535664
Coord C2 exon
chr1:203535665-203535698
Length
669 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
GTGCCTGACTCTGTTCTCAGGTC
3' ss Score
10.09
Exon sequences
Seq C1 exon
TAATGATGGAACTACGCTTGCAATCGCATCGTCATATATGTATGAAATGGATGATACCGAGCATCCTGAAGATGGTATCTTCATTCGCCAAGTGACAGATGCAGAGACAAAGCCCAA
Seq A exon
GTGAGTATGCTTCACCTGGACCGGAGCCTTTTCGTGCATTCAACCCAGGACTTATTAACTTTTCTAAATTCATGAACAGCATTGTTGATGCCTGCTCGATATTACAGCTGACTGTAGGGTTGGAGTTGATTTTATCTTGTTCTCCCAAGCTTTCAATATCCGTAGGTTGATAGACGTCTGATGGATAAAATCGTGCCTAGTTGTTTTGTAGAGAAGAATGTCAAGCTCTCATTCTTCTTGAATAGGCTCTATTATTTGAATCTGGAGTTACTACTACCCCATTGCTTCAAAATTAAGTTGAGGAATTGAAGAATAATTTATTTTAGTAAATTCTATTTAAGATATTTAAGAAATTGAACTGCCAAAAAAGTCTCCCCTCTCCGGCGATTGTTTCTGTAACATTTACAGAAGGGAGTGGCCTTTGGGTCTCACTGGAAACCCTGCTTAGCACAGCAGATTCCCTTCCTTTTGACATGTTCAAGAGGTGTAGGTGGACGCTGTGGTGTAGCGTCTGTCGTCTGCAAGGCCCCTCTCCATGTTGTGGCAGCGCAGGACAAAGCCTTTTGGCCAGTGACATCTCCTGGGCTGTGAATGCAGAGGCTTAGACATAGATTACACCATGCAGCACCTACCCCATGGCTCTTGTCCTGTGCCTGACTCTGTTCTCAG
Seq C2 exon
GTCCTCGAGGAAATCCTCGGTGAATATTTGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020643:ENSRNOT00000028020:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]