GgaINT0042405 @ galGal4
Intron Retention
Gene
ENSGALG00000009681 | BUB3
Description
mitotic checkpoint protein BUB3 [Source:RefSeq peptide;Acc:NP_001006506]
Coordinates
chr6:31033200-31036240:+
Coord C1 exon
chr6:31033200-31033416
Coord A exon
chr6:31033417-31035358
Coord C2 exon
chr6:31035359-31036240
Length
1942 bp
Sequences
Splice sites
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
3' ss Seq
ATGCAGTTTATTTATTTCAGGTC
3' ss Score
6.61
Exon sequences
Seq C1 exon
GAGGTTCTGATGGGTTTGTAAATATCTGGGATCCATTTAACAAAAAGCGGCTGTGTCAGTTCCATCGGTATCCCACAAGCATAGCATCACTTGCCTTCAGCAACGATGGAACCACCCTTGCAATAGCTTCTTCATATATGTATGAAATGGATGACATTGAACATCCTGAAGATGGTATCTATATTCGCCAAGTGACAGATGCAGAAACAAAACCTAA
Seq A exon
GTGAGTATGCATCGCCTGTGTTTGAGCCTTTCTGAGCGTTCATCCCAAGATTTTATTAATTTTCCTAAATTCATGAATAGCATTATTGATGCCAGTAGATAGTGCAGCTTGACAGTAGGGTTGGTTTTGATTTTATCTTGTTCGCCCAAGCTTTCAATATCCGTAGGTTGATAGACGTCTGATGGATAAAATTGTGCCTAGTTGTTTAGCAGGAGAAGAATGTCAAACTCTTATCCTTTTTGAATAGGTGCTATTATATGAAGCTGTGGAGTTATTGCTAGCTCATTGCTTCAAGAATTAAGTGAGGAATTCAAGAATAATTCATTTGAGTAAATGTCACTGTGTTTGGATATTTAGGACTTGGAATTAATGAAATCTGTACACGCTCTGTGTGCACCCAGCTGTTACAGAAGGGGATGGATGTGTAAAATTGAGGGCTGGCTTTTTCAGTTGCTGCGTGTTGGAGTTCACAGCCCTCTGATAATGCACTTTTCTGTCACTGTTGCTGTCAAAATGGGGCAAACTGATTTATGGGGTAAAAGATTCCTCTTAAGCTTGTTTAGGCATGAATGTTACATTAAAAATTGCCATCGTGGTGCAGAATTGCAGAACTCCAGCACAGGAGTAGTGCTTTTTATTTTCAAATCCATGTAGTTTGTCACTGTTTGTTTTTTTTATTACTCAAACTTTTTGCCCTTTAACTGAGACAACCAGCTATTTAATGTCACAAGTAGCTATACAAATAAATAAGCGATACAAATTCTTTATTTTTAAGCCAAGACCATTCCTTCTTTCCCTTAAGAGAGTTGTACGTTGCTTTGCAGCTGCCATTTCCTTACAGTAGAGATGTGAGGTGGAAGTTACGAAGGAATAAATGCATCGTTTCTTATTTGGAGATGATTGTTTTAAAACAATCTTGTTACTCATGGGAAAAGGAAGACGTAACTATTTCAATATTTCTGTGGCTTCCTCACTTACAAAAGTCCAAAGCTGATTTTTCTTCATTTATATTAAAAATTAGGTTGTGCTTGTTACATATGTTGGGGAGGAATTAAAGAAAGAAAAAAGAGGTGATAAAAGACTACTTGCTGCTGTTGGTTTTGTAATTGCAAGAGCTGCTTTCAGTTATTCTCGTTCCTTGCTAGTTATGATTGCTAATTCTGTAGATGCTTCATTCTGCCGTAGGAGGAGGTTAATCTACAATTAAACAATATTTCCTCTTGGCCCTCCATTATTTTCTGAAACAGATGGTTCATCATTTCCTGGGCTGTTAAACACAGCAAGGTTAAGGTTAGACTCTTGGGATTCAGCTAGTTTTGAATCTTATTAGGCTGTAGAAGGAAAACTAATAAGAATACTCCTTAATATCATTTTGTGACTGTAAACAATTATTTATTAGCAAACAATTGATCCCAGAAGGGCAAATTGTTTGAGTCAGTAATGAGCTGAGAAAAGACAGAACATATCTGTGTATTTGGAAAATAATTGTAACGTAATTGCAATGCATTTAGACAGGCATCTTTTTGGACCTGTTTCTATCTTTAAATGAATTCTGAAAACATTAACAAGGTTTATATGCTTTCCTGACATTTATAAGTTGCTTGTGCCAACCTTAGTGCACTAAGAATGATGCATATATTTCAGTATTGCAGTAGTGTGAGTCATCTCTGTTGTAGTCTAAAAATAAATTGCTTGCTGCTAAAGCTACTGGTCTTCTATGTTTTCGTAGTGATCTTTGTGCATTTCTGCACCGCACATCCTTAAATGGAGCTGTATGATATAAACTTAGCATTAGGTTTTTGATTGCTGAATTATTATGTATTGTATTGGTACAAGTGAATGTGGTCTGTCTGCACATTTCTGCACTTTAAAATACTGAGTGTTTTACCTGTTTATGATCATTGTAAAAAGTGCTTGCTGAAATGCAGTTTATTTATTTCAG
Seq C2 exon
GTCTACTTAGAGAAGAGATATCAGTGGAGGTCTACAAGAGTTGCCCACCTGTTCCTAACAAGACTAAGATGAAGTAATAGAAATGGGAAGAACAGCCTGTTTAGATGTTATTTTTAACTAAACTATTTCTTTGTATATTGTCCTATGTCTTAATCCATTGTTACTTTTCTGCTTACATATGGTCTCATTAGCACTTTTGCTCAACTTGTTCCCTCCCGTAGGTAATTTTCTGTATACCTTTATAAACTTGCAACAATTTTGTAGTATTGTTCATTATGAAATCCTGCAGTGGTCTCAGATGTTCAATAAATATCCTTAGATTTTTGAAAATATGTTGTGTAACAATCTTTTTTGAAGCACACATTAAGACCAGAGCTTTAACCTACCAGGATTCTTGAGTTCTAGTGGTTGGATTCGTGCTTCTGTTCTGAGATATCAATGCCTGTCCAGTCAGTGGGAGTACTGTATTACCTTTAAGAAAACAAATTGGCTGACAACAGAAATGGTAACAAAGCATTCCAGAGAAGGTGGACGTGGAGAGGAAGCTGGACTCTGCGGGAAGCTAACAAGCTTGAGCTGTTATCAGGTAGTGATAGTGGCTTTTTTTTCTTTTTCTTGCTTTGAGGGTTAATGGCTACAGAACGTTGGGCAAAAGTTGATTTTCTGCTGTCAATATAGAAAGTGATAACACTTTCCTTTTTTTTTTTTAAAGAGAATAATATTTTTACTGGCTTTTTGATGGGAAGTGGATGATAGTTTGGGGCCGGAACCTAAATATGGGAGCTGAAGGCTGAGAGTAGAATCCCTAGTCTGGGAGATGGCTGAGTGTTGAGACAACAGACTTTGTTATTAGGTCTGCCCTAACTGTTAAGTGTTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009681:ENSGALT00000015757:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(32.3=13.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAGCAACGATGGAACCA
R:
CCTACGGGAGGGAACAAGTTG
Band lengths:
346-2288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]