BtaINT0164735 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36391824-36393012:-
Coord C1 exon
chr12:36392891-36393012
Coord A exon
chr12:36392017-36392890
Coord C2 exon
chr12:36391824-36392016
Length
874 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTTTCTTCTTTCTTCCAAAGTCC
3' ss Score
8.86
Exon sequences
Seq C1 exon
GATAAAATTACTACTGGAAAAAGAAAACATGAAGATGATGAGCCAGTATTTGAACAAATTGAAAATACAGCCAATCCTTCTAGATGTCCTGTGAAAATGTTTGAATGCTACTTGTCTAAGAG
Seq A exon
GTGAGTATTTATGATACTTGATTTTTTTAAATGGTAGCAACAGTTAGGTGCTGTGAATTTATCAGAGGTGACTTTTTTTCATTGATCCTTTTTAAAATTTTTCTCTTTTCTTATTTCAATTATGTTTTTAGTCCTGTTATAAAGCACCCAGCTTGTATCTCTTAAGCATATGTTAAGAAATTGCTCTCTACTAAGGAAGTTATTGCTGTTGTAGAGGGTGAGACAGTAAACAGTGTAAAGTTTGGGGGCTGTGAGTCTCTCTTGCAGCCAGTGAAATTTTTAGAGATCACAAATTATTTTATGCTTGTTCGTTATTTTATATATGTACCCTCTAATTTTTAAAAGGTAAACATGAACTCAGAATGTATTTTCTTAGGTAATCAGTTTTATAAACTGTCCCCAGGTTAGCTGTCAAGAACCATAAAAACAGTAATGTCACCTCTAGGATGATTATTTTTAATAATTAGTATTTCAGGTGGTTTTGGGTAGCCCTCTGTGGCTACACCAGTATTTGGATCTTCCAGTCATATTTTATTCTGTCTCTGGAACTGGGATGAATCTTGAAGTATTATAATTGGCAGTGCTTTACTTGTTTAATGGCAGTATTAAAATAATGATTAAAAATAATGTTTCTATCGATGATGTCTTGGTTTCAGTGAAATACAGAATTTAAATTATGGTGGGAAAATACTCTTATTATAGAAATTAACTTTCAGAATGTCTCAAGTGATAGAATATTTAATGTAGTTAATCATGCATGTGGTCTGCCCATGTAATGTGGTAATGGTAGCAGAATTATTCTTAAAATAAAAAAATAAGTTGTGAGGAATTTTGTATACATACTGTGAAATTGACTTTCTTCTTTCTTCCAAAG
Seq C2 exon
TCCACAGAATCTTAATCAGAGAATGGATGTTTTTTATTTGCAACCAGAATGCTCTAGCTCTGCAGACAGCCCTGTCTGGTACACGTCCGCCTCACTGGACCGAAACACCTTGGAAAACATGCTCGTACGGGTTCTTTTAGTAAAAGATATTTATGATAAAGACAATTACGAACTGGATGAAGACACAGACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403:ENSBTAT00000027190:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.488 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF120123=DUF3504=FE(23.3=100)
A:
NA
C2:
PF120123=DUF3504=PD(27.3=72.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACTGGAAAAAGAAAACATGAAGA
R:
GTCTGTGTCTTCATCCAGTTCGT
Band lengths:
303-1177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development