RnoINT0169125 @ rn6
Intron Retention
Gene
ENSRNOG00000008734 | Zmym2
Description
zinc finger MYM-type containing 2 [Source:RGD Symbol;Acc:1593255]
Coordinates
chr15:37225661-37227301:+
Coord C1 exon
chr15:37225661-37225781
Coord A exon
chr15:37225782-37227108
Coord C2 exon
chr15:37227109-37227301
Length
1327 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CCCCCCTTTTTTCTCCAAAGTCC
3' ss Score
8.92
Exon sequences
Seq C1 exon
ATAAAATTGCTACTGGGAAGCGGAAGCATGAAGATGATGAGCCGGTATTTGAGCAAGTTGAGAACACAGCCAACCCTTCCAGATGTCCTGTGAAAATGTTTGAATGCTACTTGTCTAAAAG
Seq A exon
GTGAGTGAACATTGATGGCATTTGACTAAAACTTTGTAGTACTGGGGAGTTTAACTTGGGGTTGCCTGCCTACTAGATATACCGAACTACATCCTTCGCCCAGTAGTTTTTAAAGATGTTTAAGATGCTTTAAAGGTAATTATTAAGAAATGAAGGTATTTAATTAATTTTAAAGATTTTTTTTCTCCTTACTTAAATGGAGTTTTTTGTTCCAAAGTTATATTTAGCTCTAACTTTAGAGTCCCCTTGTGGAATACCTAGCACATGTACTTTATATGATTCTAGTCCATGTTGAGAAATCACTCTTTACTAAAAACTATCACTCTTGCTGTCCTCCTTAGTTAGAACATTAAAGTAGGTCTGTTGATTGCCAAGCAAAGATGCAAACTTTCTGTACAGAAGTAATCATGTTAGGCTGTTGGGGTGTTTAGTCTCTTTACACAAACAGGCTGTTGGCCATTGTCTGCCAGCTTCTAGTGCAAAGGTAGGTGTGTTTAAAAGTAGGTAGAATGAGCAGAGATGAAGGGAAAATAGATGTGAATGGAAACAGTCTTGGAAGACACTTTTTGGAAGGCCCTTACTCTTCAGTCGCATGACTGCCTTTTTCCCCTGTCTAAAAGCAGCACACTGGAACTATTGAGGAGCCGAGGGCCCATGGCCTGTCTCATTTTGAGTGCTGGTTTAAATAAGCACTCTGATTTCCAGAAAGAGAAAGTACGGAACTGTGTTGTACATTGTAAATAGCTGTCCAAATCCTAGTGCGACTTCCAAGGTGGCTCTCGTGAGCTAGTGAAAACATGAGCATCACCCAGCATGACCATATCTGTCTGTGGGTTCTTCAGCTCTGTTTTGGACCATCAGTTTAGTTTCGTGCATTTCCAGTGCTGGTAACAATTTGCCAGGTGGGAATTCGTTTTTTGGAATTTAATGTTTTTCTATTGTATAGTGCAGTGAGACTTTTTTTATGTGTTACGTATTTTCATCATTTTAGGTCACATTTTTCACATTTCCTTTTTCCTGAGGAGGACATGCACACTTAATGTCATTGAGATTGTAATTGGCATCATACCGTGATGACTAAAATTATAGTTTGTATATTAATGGGGTCTCAGATTTATGAAATAAGAATTTCAATTATTTGGAAACTAATCCTTTATCACAAAAACTTAGAGAACAGTTTACTGATACATTATTATTGCAGTTAATGAGTCCGAGGCTCTGAGTACATCTATTGTTTGGTGCTGAGTTACTCTTGAAAGATTTTAATTTGCAGGGGGTTTTGTTATGTTTTATGAAATTGACCTTTTCCCCCCTTTTTTCTCCAAAG
Seq C2 exon
TCCACAGAATCTTAATCAGAGAATGGATGTATTTTATTTGCAACCAGAATGTTCTAGTTCTACAGATAGCCCTGTCTGGTACACATCTGCTTCCCTGGACCGGAACACCTTGGAAAATATGCTTGTACGGGTTCTTCTAGTAAAAGATATTTATGATAAAGACAATTATGAACTGGATGAAGACACAGACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008734:ENSRNOT00000011684:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.512 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF120123=DUF3504=FE(23.3=100)
A:
NA
C2:
PF120123=DUF3504=PD(27.3=72.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATTGCTACTGGGAAGCGGA
R:
AGTCTGTGTCTTCATCCAGTTCA
Band lengths:
310-1637
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]