GgaINT0106910 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:183330409-183333556:-
Coord C1 exon
chr1:183333436-183333556
Coord A exon
chr1:183330608-183333435
Coord C2 exon
chr1:183330409-183330607
Length
2828 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
ATTCCTCTTATTTTTCTCCGTTG
3' ss Score
-0.56
Exon sequences
Seq C1 exon
ATAAAATTACTACTGGGAAAAGGAAACATGAAGATGATGAACCAGTATTTGAACAGATTGAAAACACGTCTGATCCAACTAGATGCCCTGTGAAACTGTTTGAGTGCTATCTGTCTAAAAG
Seq A exon
GTACGTATGATATGGGGTAAAAAGGAAGAGTTCTAGAGAAGACCTGGTACAAAAGGAAATGTTTTGATGATGCATTAAATATGCTCAAGCAGAGGGAATGTATTGAATTCTTCTAAAAAATATACTTAAATGAAAGCACTCTTGTTAAGTGGACAACACCTGCACAAAGTGTGGAAGCAGAGTACTGTCAAGGGCTTCATCTGGGAATGATTTCTTACACAGAATTCCCAAGCATTCTGCAGAGAATTACCAATTAAGAATTAACAGCAAGGAATCTGGTAGATTTTGCTACTGGAATGTTGTTTGTGATGTCTGTGTCTCTTCAGTAAGAGTTTTGTTGAGAAAATTTGGTCCCTGGAACATGTCCAGAGAACAGCAGCGATGCTGTGAAGTGTCTGGAGCACAAGTCTTATGGGGAGTGGCTGGGGGAGTGGGGACTGTTCAGTCTGGAGAAGAGAAGGCTCAGGGGAGATCATATCACTCTCTACAACTGCCTGAAAGGAGGTTGTTGCGAGGTGGGGGTTGGCCTCTTCTCCTGGGAAACAGTGATAGAACGGGAGGTTAAGTTGCACCAGGGGAGGTTCAGGTTGGATATTAGAAGCTTTTTTTTTTTGCAGAAAGAGTGGTGAGGCATTGGCACAGGCAGCACAGGCTGCCCAGGCAGGCATCAGGCGTCACTGTCCCTGGAGGTGTTTAAGGAAAGGGTAGATGTAGCACTTAGGGTCATGCTCTAGAGGGCAATATTAGTGGTTGGTGGACGGTTGGACTTGGATGATCTTACGAGTCTTTTCCAACCTTAATGATTCTCTGATTCTATGGAAAAGATTTGCTTCATGTTAAGTCGTCACAAATTTGAAAGGTAGATTCTTTTGAGGTACCTAACTTGACAACGTATCTAAAAGTATTGTGCAGAAGTAAAAATAAAATCATAATTAACTCTGCATTTAGAAATAGCTTGTTTCCATCCTATCGGTTCAGAGATTAATGCATTTAACAATGTATTAATACATTAAAAAGAAACTTTAGGAAGATCTTGCAAAAAATTAATTGAGCAGCTAAGTGTTTTGGAAGCGTTTGAGAACAGAATTTCATGGGAAATATTCTTTTTAAATTGGAGCAGCCACTGTGTCAACTGATTTTAATGGAGACTTAATGTATGTAAGTGTTAAGTAGAACATAGGCAAGTGATACAGGAGAAGAAAAATTACATTGTGTTTGCGGCACAGTAGATCAAATGAAGCATGAGATCCAACCTGTGTTGGGAAGTAATAGCTTACTCTTAAAAGTGAAGAATGGTGTAGACCATGAATGTCCAACTTTTTGGTTTCCCTGAGTCATTTTGAGTGAAGAGGAATTGTCTTGGGCTGCACATCAAATATATAATTGATGTTATCTAAGTAGCAAAACTCTTTTTTAACATATTAAAAAAAAAGGGCAACAAAAATGTAAAAGTAGTGGGAGATTTGACCTTGTTCTTGTGAAACTAATTATTTTGGATAATTTTTTTTCAGAAATCTTGAAACCTGTTCTCAAGTTCCTGTATTAAAATGGAAAGCACAGCTGCATATTTTTTGCTGCTCACAGGGCTGCGTTTAGCCAGTGTGTCAAAACACGTGCCACTATTTGCCATAACTTTAGCTTACCAATTTTTATTTTGAATGCTGTTAGTGTTTGAAACATAGCACAGAGAAGTTGATTTTTACCTTGAAGTTGTTAAAAATCTGTCAGCTAGTCCCCCTTTCCTGCAGATGCTGGTTGCTATTGCTGCCTACAGCAGCAGACTGTTTCTCCTGGTTCCACTTCTACAATGTGTACATTGCATCTTTGAAATAATTTTGTTAAAGCATTTAATACTTGAAAATGTATATGAACTGTTGTAAAGTTTGGGGTAATGCCAGCTGTTTGAAATGCAGCTGGACAACTGCAGCTGAAATGTGCGAGTCCTCTCATTCACAGCTGTAAGCAATGCACCATTGCTTGTTCCTATAAAAATACTGGCTTGTCCAAAATGTAGGAAGGAGTTGAATATAGTTTAATTATTAGAATATAGTAAAACAGCACATTCTGGCTTCTAATCTGACAATCTGACCGATGTAAGAGCAGAAGAAACCAAAATTTACCCAACTGGGTGAAAAGCAACACCTATAATTTTATCAGCCAATCTGGGAAGATTACCTTGGTAGTTTTACCAAAGTAACATGACATGCAGCTGATTTCTGAAGTCCGCAGTATTCATGAAAGAGACAGCAAGAGTGAGTACTTGTGTATGCAGCATTGAAAAATATTTTCTTGCCTAAATGGGCAAAAGAAAAGAATTTAATTAGTGGGTTAGAAGATATGCCTGAGTTGGATTGAGCAAGTATATGAACTGCAAGATAGAAGAGGTTGAGAATTAAGGGATGATTTTAAGACTTAGTGACCAACTCTTCAAGTAAATAGGAGGAAGAGGGAGTTTAGCTTCTTGTTGCACTTCCATGCACCTCAGAACTACCACCACTGCTTTTCAAGGGAAACCCAATCTCTGTATTCAGAAACAGGAAATATTTTCTGTTTTAGAAGTCCTAGAGTTGCAAAGTTTTGCAAAACTGGAAGAGCCTGCAGTCTCAAATGCTCTTGCTCAGTCCATGGTGCCTGCTTTGGGCTGTCCTGAGGGTGCAGGACTGGCTGGCTGCACAACACTGTGAACAAGATAGCATTTCTCCACAGTAATCTTCATTTTGTAGCAGGCCAAGGTAAAAGTATAGTTTTGTTAATACAGAATGTCAGAAATACTAATGTATTAATTTATCCTGTAAAACCATTATCCTAATTCCTCTTATTTTTCTCCG
Seq C2 exon
TTGTAGCCCACAGAATCTGAATCAGAGGACGGACATGTTCTATTTGCAGCCAGAATGCTCTGTCTCCTCAGATAGTTCTGTCTGGTACACTTCCACCTCACTGGACCGCAACACTTTGGAAAATATGCTCGTACGGGTTCTTTTAGTAAAAGATATTTATGAAAAAGACAATTATGAACTGGATGAAGACATAGATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139:ENSGALT00000027684:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF120123=DUF3504=FE(23.0=100)
A:
NA
C2:
PF120123=DUF3504=PD(28.2=73.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]