MmuINT0180474 @ mm9
Intron Retention
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:57577019-57579186:+
Coord C1 exon
chr14:57577019-57577139
Coord A exon
chr14:57577140-57578551
Coord C2 exon
chr14:57578552-57579186
Length
1412 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
TTTTTCTTTTTCCTCCAAAGTCC
3' ss Score
9.1
Exon sequences
Seq C1 exon
ATAAAATTGCTACTGGAAAACGAAAACATGAAGATGATGAGCCAGTATTTGAACAAGTTGAAAACACAGCCAACCCTTCTAGATGTCCTGTGAAAATGTTTGAATGCTACTTGTCTAAAAG
Seq A exon
GTGAATGAACATTAATGATATTTGACTAAAATTATATAGTACTGGGGAGTTTAACTTGGGGTCGCCTGCCTACTAGGTATAAGTGCTCTACTACTAGCTACATCCTTTGCCTGGTACTTTTAAAAGATGTTTGTATAAGTTGGTTGACTTTAACACTATTAAGAAATGAAAGTATTTAATTAACTTAAAAATTTTTTTTCTCCGTGCTTTCATGGAGTCTTTTGTTCCAAAGTTGTATTTAGCTCTAACTTTAGAGTCCCCTTGTGAAATACCTAGCACATGCACTTTAGGGTTCTAGTCCATATTAAGGAATCACTCTTTACTAAAAAATACCACTCCTGCTGTCCTGTCCCCCTTACATTAGAAAATTAAGCAGGTCTGTTGATTGCCAAGCGGAGATAGAAACTTTTGTAGAGGTAACTATGTTATGCTTCTGGGGTGTTTAGTCTCTGCTTTATCTCTTTAGTTGTCCTACTAAACTAGAAAGAGGCCCATACTGTAAATAGGTAGTTCATGGCACATGACTTTACACAAACAGTTTGCTAGCTTCTAGTGCAAAGATAGATGTGTTTAAAAGTAGGTCGAAGGAGTTGAGGTGAAAATAAAATACTTAGATGTGAATGGAAACAGTCTTTGAAGACATTTCCAGTTGTATGACTGTCATCTTCCCCTGTCTAAAAGCAGCACACACTGGGAACTACTAAAGAGCTGAGGGCCCAAGGACTGTCTCGTTTTGAGTATTGTGAGTGTTGTTTTAAATAAGCACTCTCACTTTCAGAAAGAGAAAGTATGTTGTGTTGTACATTGTAAACAACTTTCCAAATCATAGTGTGATTTTCAGGGTGGTTCTCATGAACTAGTAAAAACATGAATGTCACCTCTAACATGACTATGTATCTAACTGTGGCATAAAGGTAGCTTTCTTCAGCTCTATTCTGGACCATCAGTTTAGTTTTGTGGATTTCCAGTGCCGGTAACAATTTGCCAGGTGTGTGTGAATTCCTTTTTTGGAATTTGATGTTTTTTCTAGTGCAGTAAGACTTTTTTTGTGTTATATATTTTCATCATTTTAGGTCACATTTTTCACATTTCCTTTTTCCTGAATGGACATACACACTTAATGTGATTGAGATTGTAATTGGCACAATTACAATAATGACTAAAATGATAGTATATATATTAATGGAGTCTTGGATTTATGAAATAAGAATTTCAATTATATTTGGGAACTAATCCTTTGTCATAAAAACTTAAGAGAGCAGCTTACTGATATATTATTGCAGTTAATGAAGCAGAGGCTCTGAGTACATCTATTGTTTAGGGCTGAGTTATTCTTAAAAGAAGTAAATTTGCTGGGAATTTTGTTATGTTTTGTGAAATTGACCTTTTTTCTTTTTCTTTTTCCTCCAAAG
Seq C2 exon
TCCACAGAACCTTAATCAGAGAATGGATGTTTTTTATTTACAACCAGAATGTTCTAGTTCTACAGATAGCCCTGTCTGGTACACATCTACTTCCCTGGACCGGAACACCTTGGAAAATATGCTTGTACGGGTTCTTCTAGTAAAAGATATTTATGATAAAGACAATTATGAACTGGATGAAGACACAGACTAAAAAGGACCATTTCAGAAGCAATGGGATAACACAGCATTAGATAGTCATGCTGCTAGATCTTTACAGGAAAACATTTTAAGTTTACTCCTTCTGTTCTGAGTTTTGTAGCAATGTACCCACACTGGGTATTACCATGTAAATAATCTGTGTGTGAAAGTTGCCATTATTCTATGTAGTGGTTTTAGGATACTTAACAAATACATCAAATTCTTTTTTATTATTATTTATTTGATTAGGTATGTTTGTAACTTTTTACATTACAAATAAGAAGAGAATGTGCCATGTATAAGTTTTTCTTGTTGCACTGCTCTGCTGTTGCAAAGCTCCCTGCAGAGGGCGGGCTTTATGCGTTCCTGACCAGATGGTTGTGTATGGGTAGCACTACTCAAGTTTAGAACTTGCGGTGTCTTTCAGAATTTTTAAAATAAACTGTAAACTAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945-Zmym2:NM_029498:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.506 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF120123=DUF3504=FE(23.3=100)
A:
NA
C2:
PF120123=DUF3504=PD(27.3=72.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAACCCTTCTAGATGTCCT
R:
TGCTACAAAACTCAGAACAGAAGGA
Band lengths:
357-1769
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: