GgaINT0106910 @ galGal4
Intron Retention
Description
NA
Coordinates
chr1:178272655-178277441:-
Coord C1 exon
chr1:178277321-178277441
Coord A exon
chr1:178274487-178277320
Coord C2 exon
chr1:178272655-178274486
Length
2834 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
CTTATTTTTCTCCGTTGTAGCCC
3' ss Score
9.39
Exon sequences
Seq C1 exon
ATAAAATTACTACTGGGAAAAGGAAACATGAAGATGATGAACCAGTATTTGAACAGATTGAAAACACGTCTGATCCAACTAGATGCCCTGTGAAACTGTTTGAGTGCTATCTGTCTAAAAG
Seq A exon
GTACGTATGATATGGGGTAAAAAGGAAGAGTTCTAGAGAAGACCTGGTACAAAAGGAAATGTTTTGATGATGCATTAAATATGCTCAAGCAGAGGGAATGTATTGAATTCTTCTAAAAAATATACTTAAATGAAAGCACTCTTGTTAAGTGGACAACACCTGCACAAAGTGTGGAAGCAGAGTACTGTCAAGGGCTTCATCTGGGAATGATTTCTTACACAGAATTCCCAAGCATTCTGCAGAGAATTACCAATTAAGAATTAACAGCAAGGAATCTGGTAGATTTTGCTACTGGAATGTTGTTTGTGATGTCTGTGTCTCTTCAGTAAGAGTTTTGTTGAGAAAATTTGGTCCCTGGAACATGTCCAGAGAACAGCAGCGATGCTGTGAAGTGTCTGGAGCACAAGTCTTATGGGGAGTGGCTGGGGGAGTGGGGACTGTTCAGTCTGGAGAAGAGAAGGCTCAGGGGAGATCATATCACTCTCTACAACTGCCTGAAAGGAGGTTGTTGCGAGGTGGGGGTTGGCCTCTTCTCCTGGGAAACAGTGATAGAACGGGAGGTTAAGTTGCACCAGGGGAGGTTCAGGTTGGATATTAGAAGCTTTTTTTTTTTGCAGAAAGAGTGGTGAGGCATTGGCACAGGCAGCACAGGCTGCCCAGGCAGGCATCAGGCGTCACTGTCCCTGGAGGTGTTTAAGGAAAGGGTAGATGTAGCACTTAGGGTCATGCTCTAGAGGGCAATATTAGTGGTTGGTGGACGGTTGGACTTGGATGATCTTACGAGTCTTTTCCAACCTTAATGATTCTCTGATTCTATGGAAAAGATTTGCTTCATGTTAAGTCGTCACAAATTTGAAAGGTAGATTCTTTTGAGGTACCTAACTTGACAACGTATCTAAAAGTATTGTGCAGAAGTAAAAATAAAATCATAATTAACTCTGCATTTAGAAATAGCTTGTTTCCATCCTATCGGTTCAGAGATTAATGCATTTAACAATGTATTAATACATTAAAAAGAAACTTTAGGAAGATCTTGCAAAAAATTAATTGAGCAGCTAAGTGTTTTGGAAGCGTTTGAGAACAGAATTTCATGGGAAATATTCTTTTTAAATTGGAGCAGCCACTGTGTCAACTGATTTTAATGGAGACTTAATGTATGTAAGTGTTAAGTAGAACATAGGCAAGTGATACAGGAGAAGAAAAATTACATTGTGTTTGCGGCACAGTAGATCAAATGAAGCATGAGATCCAACCTGTGTTGGGAAGTAATAGCTTACTCTTAAAAGTGAAGAATGGTGTAGACCATGAATGTCCAACTTTTTGGTTTCCCTGAGTCATTTTGAGTGAAGAGGAATTGTCTTGGGCTGCACATCAAATATATAATTGATGTTATCTAAGTAGCAAAACTCTTTTTTAACATATTAAAAAAAAAGGGCAACAAAAATGTAAAAGTAGTGGGAGATTTGACCTTGTTCTTGTGAAACTAATTATTTTGGATAATTTTTTTTCAGAAATCTTGAAACCTGTTCTCAAGTTCCTGTATTAAAATGGAAAGCACAGCTGCATATTTTTTGCTGCTCACAGGGCTGCGTTTAGCCAGTGTGTCAAAACACGTGCCACTATTTGCCATAACTTTAGCTTACCAATTTTTATTTTGAATGCTGTTAGTGTTTGAAACATAGCACAGAGAAGTTGATTTTTACCTTGAAGTTGTTAAAAATCTGTCAGCTAGTCCCCCTTTCCTGCAGATGCTGGTTGCTATTGCTGCCTACAGCAGCAGACTGTTTCTCCTGGTTCCACTTCTACAATGTGTACATTGCATCTTTGAAATAATTTTGTTAAAGCATTTAATACTTGAAAATGTATATGAACTGTTGTAAAGTTTGGGGTAATGCCAGCTGTTTGAAATGCAGCTGGACAACTGCAGCTGAAATGTGCGAGTCCTCTCATTCACAGCTGTAAGCAATGCACCATTGCTTGTTCCTATAAAAATACTGGCTTGTCCAAAATGTAGGAAGGAGTTGAATATAGTTTAATTATTAGAATATAGTAAAACAGCACATTCTGGCTTCTAATCTGACAATCTGACCGATGTAAGAGCAGAAGAAACCAAAATTTACCCAACTGGGTGAAAAGCAACACCTATAATTTTATCAGCCAATCTGGGAAGATTACCTTGGTAGTTTTACCAAAGTAACATGACATGCAGCTGATTTCTGAAGTCCGCAGTATTCATGAAAGAGACAGCAAGAGTGAGTACTTGTGTATGCAGCATTGAAAAATATTTTCTTGCCTAAATGGGCAAAAGAAAAGAATTTAATTAGTGGGTTAGAAGATATGCCTGAGTTGGATTGAGCAAGTATATGAACTGCAAGATAGAAGAGGTTGAGAATTAAGGGATGATTTTAAGACTTAGTGACCAACTCTTCAAGTAAATAGGAGGAAGAGGGAGTTTAGCTTCTTGTTGCACTTCCATGCACCTCAGAACTACCACCACTGCTTTTCAAGGGAAACCCAATCTCTGTATTCAGAAACAGGAAATATTTTCTGTTTTAGAAGTCCTAGAGTTGCAAAGTTTTGCAAAACTGGAAGAGCCTGCAGTCTCAAATGCTCTTGCTCAGTCCATGGTGCCTGCTTTGGGCTGTCCTGAGGGTGCAGGACTGGCTGGCTGCACAACACTGTGAACAAGATAGCATTTCTCCACAGTAATCTTCATTTTGTAGCAGGCCAAGGTAAAAGTATAGTTTTGTTAATACAGAATGTCAGAAATACTAATGTATTAATTTATCCTGTAAAACCATTATCCTAATTCCTCTTATTTTTCTCCGTTGTAG
Seq C2 exon
CCCACAGAATCTGAATCAGAGGACGGACATGTTCTATTTGCAGCCAGAATGCTCTGTCTCCTCAGATAGTTCTGTCTGGTACACTTCCACCTCACTGGACCGCAACACTTTGGAAAATATGCTCGTACGGGTTCTTTTAGTAAAAGATATTTATGAAAAAGACAATTATGAACTGGATGAAGACATAGATTAAAACAAACTTCCAAAAACAGTCAAGAAAACAAACAGCATTAGATATAGTCACGCTGCTAGACTTTTATTATGGAGAACATTTCAAGTTTACCCTTTGTTTTATGAGTTTTGTAGCATTGTGTACCCTCACCCGGGTATTAACATGTAAATAGTCTGTGAGTGAAAGTTTCCATTATTCTGCGTAGTGATGCTAGGATACATAACAAACACATTTCAGATTCTTTTTTTTTATTATTATTTATTTGACTAGATATGTTTGTAACTTTTTACATTGCAAAATATGAATGAGAATGTGCCATGTGTAATTTTTTTTTCTCGTAGTAAGAGACATCCATATTGCACAACTCTACTGTTGCAAGCTCCCTTGAAAGGACACTCTCTTTTAATGGGTTCTTAAACCGAATGGTTGTGTATGGGTAGCACTACTAAAGTTTAGAACTTGCTGTGTCTTTGAGAATTTTTAAATAAATTGTAAACTAATAGGTTTTTTACTTTTTAGTTACTGAAGCCTTATAAGGTTATGTAGAGAGATTCCATCTTATGTACCAAAAATAGACAAAAGAGAATGCTGTCGATATTGGTGTACTGTAATGTGAATCTATTCTGGTGAAAACATTTTTTTTTGTTGCCCTTATTAAAACCTTAGTGTCCTTTCCTTATTTGTGACTCTCTCTCAATTGCCCCTACAAATAATATATATATACATATATAAATAAATGAACATAAGCTTAAAGCATGTGATCATCATGACATGTATTTTGTTTAAAAAAGGGAGACAAAAGAAAAAAAAAATCCAAAGGAAAAAGTGGGGAAAAAAAGAAAAAGAGGAAAATGTCTGATGACAATGCTGTATAATTCTTTTCTGTCTTTACTTTTCTGACCATAAATGCTGGTACCTCATATCACTGTAAATCTGTCCTTTGTAGCCTTAGCGAAATGAATTTTGATGCTGTATTACATAAAGTAATATGGTATACTAAATTTGGACTTGTTTGTTCTTGCATTGCTGTACTTAAATACGGTCAGTACTTGACAATGGGTGGGAAAATTCTTTTTACTGATGCCTCCATACAAAAGCCATATGACATGTGATGTTGCAGAACGCTGATAAATTTTTGAAGAAAATCCCTTTCATATGTTCTGTATCCTTTCGTTGTGCTTATTCTGCATAAGGAGTCTGATTTCCAGATCTGCTCAAGTTTTGTTCCTTGTTCTTGTTGAACTGATGCAAGCAATGTGGTGGCTCATGCAATGATTTTGCTATTGTTCTGAAAAAAAATGTGGTAAAATATTCTCCTATAAAGTAGTCATTAGTTTTGCTTTCTTAACTGACTTCAAGTGTGTTGAGAAGAATCATTTATTAAAGAGGGAAATTTTCTGTCTGTGTATGTATGTGTATATATATATATACGTGTGTGTGTGTGTATATACACATACCACCTTAGAGCTCATTTCTTTCAAGGGCTGCATGACTTTTTGGTTTTCCTTAGCTTAAGAAAAATGCACTTGGAGACTCATCTTTCTATACAGAGAAATAAAGCTTCGGTTGCTTTGTTTTGTAAAGCAAGTTCATTTACATTTTTACTATTCTCTTCTGTGTCCATGAATATGTATTGACTTTAGATATACCAGTATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139:ENSGALT00000043420:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.463 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF120123=DUF3504=FE(23.3=100)
A:
NA
C2:
PF120123=DUF3504=PD(27.3=72.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]