HsaINT0185990 @ hg38
Intron Retention
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger MYM-type containing 2 [Source:HGNC Symbol;Acc:HGNC:12989]
Coordinates
chr13:20083656-20086747:+
Coord C1 exon
chr13:20083656-20083776
Coord A exon
chr13:20083777-20085821
Coord C2 exon
chr13:20085822-20086747
Length
2045 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTTTCCTCCCGCCTCCAAAGTCC
3' ss Score
6.9
Exon sequences
Seq C1 exon
ATAAAATTACTACTGGAAAAAGAAAACATGAAGATGATGAGCCAGTATTTGAACAAATTGAAAACACAGCCAATCCTTCCAGATGTCCTGTGAAAATGTTTGAATGCTACTTGTCTAAAAG
Seq A exon
GTGAGTGTTAATGATACTTAACTTTTAAAAATGTTGGTAGAAGTTGGCTGGTTTAAATTTAACATTACCAAGAAGTGACTTTTTTAGATGGATTCTTTCTCAGATTTCTTCTCTCTCAGTTATACCCAAGTTCATTCAGTTATAATCTTTTATTTTGAAATACCCAGTTTATACATCATACTTAGAGTTTAAGCATGTGTTAAGAAATCTCTCTCTACTAATGAAATTTCTACTGCTGTCATTTTCTTTTGGAGATGGGGTCTTGCTCTCTCACCGAGGCTGGAGTACAGTGGCACGTGATCATAGCTCATTGCAACCTCAAACTCCTGGGCTTAAGCCATCCTCCCACCCTCTGCCTCCTGAGTTGCTGGGACTGCAGGCATGTGCCTCCATAGCTGGCTAATTTTTGTATTTTTTGTAGAGACAGGATCTCACTGTGTTGCCCAGGCTGGTCTTGAACTCCTGACCTCAAGCCATCCTCGTGCCTCAGCCTCCCAAAGTGCTGGAATTACAGGCATGAGCCATTGCGCCTGTCATTGTCTTTTAAATTACAGCAATTCCAATGACAGCAAAGCAAGGGACACAAACTTTTTCTTAAACGGTCAGATGGTAAATATTTTAGGCTTTTGGGCCTATGGAATCACTATTGTAACTAATCGGTTCTCTTGTGACTAGAAAGCAGCCATATACTATATATAAATTCATGGCATGTGGCTGTGTTATAATAAAACTTCACATAAGCAGGTGGCTGGCTGTAGTTTGCCAATGCCCGGTGTAAAGGTATGCTCAAAGGTAGTATAGATAGGTGGAAATGTAAGTGAAGTATTTACATTTAAGAGAAAACAGTCAAGCAGGTATGAAAAATGGAATCATGTTCTGGAATTTTTTTTCCCCTCAATCTCAGACCAACAGGCATTTTAAAAAGTTTAAGCCAATAAAACGTTTAGAGACCATAGATTATTTTATGCTTGCCTGTTGTTTTAAGTAAGCACTCTCTAATTTTCAGAAGGTCAGCATGAATTCAAAATGTACTTCCCTGTTTAAACAAATTTATAAATCACAGGTCCCCAGGATGGCCCTCAAGGACTTGTAAAAACAATAGTATCATGTATAGGATGATATTAGTACAAGTTGAATGCGCCTTATCCAAAATGCTTCTGACCAGAAGTGTTTTAGATTTCAGATTTTTTCGGATTTTGGAATATTTGCATATACATTATAAGATGTCTTAGGGCTGGGACCCAACTCTAAACATGAAATTCATTTATATTTCATATACACCTTATACATGTAGCCTGAAGATAATTTTATTTATGCATAGCCTGAAGGTGATTTTATTTTCCCCTTGGGGTTGCTGAATAACCTGTGTGTTATGTGCCTGTGTTTTGGGCGCGAACTCCTCACATGAGGTCAGGTGTGGAACTTTCCACTTTTGGTGTCATTTTGGCAAAGAGTTTCAGATTTTGGATTTTTGAATTAGGGATGCTCAGCCTGTATTTCTCACCATGGTTTAGGGTGGTCCTATTTGGCTGCAGTAGTGTCAGGGTCTTCAGTTGGTAGTAACTATTTGTTAGTAGGAAATTCCTATCTCACTATTACCTTGTTGGTATTTTAAAAATTGAGTTTCTATTATGTAGTGCTGTAAGAATTTTTTAATTTTATGTGCTGCCATACATATTTCATCAATTCTAAGACATTTTCACATTTCACTATTTCTGAAACTGGGATGCACAGTTTAAATTGTTGCATCTTGAAATCATAATTGGCAGTGTTTCACTTGCTTAATGGTAGCATTAAAATAATGAGTGGTGTGTCTATTGATAGTGTCTTGGATTTAGTGAAGTAGAATTAAAATTGTGGGAAATAATCTCTATCTCAGAAAATAACTTTGAGAATATTTTAATGACAGAATAATGGAGACAGTGGGGCATAGGGGGTCTGGTCATATAACGTGATTAATGGGGTCTGAATTATTCTTGAAAAAAGAAAAAGTTGTGGAAATTTTGTGAAATTGACTTTTTCTCTTTTTCCTCCCGCCTCCAAAG
Seq C2 exon
TCCACAGAATCTTAATCAGAGGATGGATGTTTTTTATTTGCAACCAGAATGCTCTAGTTCTACAGATAGCCCTGTCTGGTATACGTCTACTTCACTGGACCGAAACACCTTGGAAAATATGCTTGTACGGGTTCTTCTAGTAAAAGATATTTATGATAAAGACAATTATGAACTGGATGAAGACACAGACTAAAAAGGAACGTTGCAGAAGCAATCGGGATAAAACAGCATTAGATAGTCATGCTGCTAGATCTTTATTATGGAAAACATTTCAAGTTTACTCCTTCTGTTTTGAGTTTTGTAGCAGTGTACCCACGCTGGGTATTACCATGTAAATAATCTGTGAGTGAAAGTTGCCATTATTCTATGTAGTGGTTTTAGGATACTTAACAAATACATTCAAATTCTTTTTTTATTATTATTTATTTGATTAGGTATGTTTGTAACTTTTTACATTACAGAATATGAATGAGAATGTGCCATGTATAATTTTTTTCTTGTAGTAAGAAACATCCATATTGCACAACTCTACTGTTGCAAAGCTTCCTTGGAAGGGGGCTCTTTTACTGGGTTCTTAACCAGATGGTTGTGTATGGGTAGCACTACTAAAAGTTTAGAACTTGCAGTGTCTTTCGGAATTTTTAAAATAAACTGTAAACTAATAGGCTGGGGTTTTTGTTTTGTTTTGGGGTTTTGTTTTGTTTGGTTTTACATTTTAGTTACTGAAGCCTTACAAGGTTATGTAGAGAGATACCATCTTCTGTACCAAAAATAGACAAGAGAATGCTGTCAATATTGGTGTACTGTAATGTGAATCTATGCTGGTGAAAACAATTTTTTGTTCCCCTTATTAAAACCTTAGTGTCCTTTTCTCATTTGTGGCTTTCTGCATCACCCAATCAATAAAAAACAAATATATATATGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741:ENST00000382870:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.480 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF120123=DUF3504=FE(23.3=100)
A:
NA
C2:
PF120123=DUF3504=PD(27.3=72.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains