MmuINT0180474 @ mm10
Intron Retention
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:56958182-56962579:+
Coord C1 exon
chr14:56958182-56958302
Coord A exon
chr14:56958303-56959714
Coord C2 exon
chr14:56959715-56962579
Length
1412 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
TTTTTCTTTTTCCTCCAAAGTCC
3' ss Score
9.1
Exon sequences
Seq C1 exon
ATAAAATTGCTACTGGAAAACGAAAACATGAAGATGATGAGCCAGTATTTGAACAAGTTGAAAACACAGCCAACCCTTCTAGATGTCCTGTGAAAATGTTTGAATGCTACTTGTCTAAAAG
Seq A exon
GTGAATGAACATTAATGATATTTGACTAAAATTATATAGTACTGGGGAGTTTAACTTGGGGTCGCCTGCCTACTAGGTATAAGTGCTCTACTACTAGCTACATCCTTTGCCTGGTACTTTTAAAAGATGTTTGTATAAGTTGGTTGACTTTAACACTATTAAGAAATGAAAGTATTTAATTAACTTAAAAATTTTTTTTCTCCGTGCTTTCATGGAGTCTTTTGTTCCAAAGTTGTATTTAGCTCTAACTTTAGAGTCCCCTTGTGAAATACCTAGCACATGCACTTTAGGGTTCTAGTCCATATTAAGGAATCACTCTTTACTAAAAAATACCACTCCTGCTGTCCTGTCCCCCTTACATTAGAAAATTAAGCAGGTCTGTTGATTGCCAAGCGGAGATAGAAACTTTTGTAGAGGTAACTATGTTATGCTTCTGGGGTGTTTAGTCTCTGCTTTATCTCTTTAGTTGTCCTACTAAACTAGAAAGAGGCCCATACTGTAAATAGGTAGTTCATGGCACATGACTTTACACAAACAGTTTGCTAGCTTCTAGTGCAAAGATAGATGTGTTTAAAAGTAGGTCGAAGGAGTTGAGGTGAAAATAAAATACTTAGATGTGAATGGAAACAGTCTTTGAAGACATTTCCAGTTGTATGACTGTCATCTTCCCCTGTCTAAAAGCAGCACACACTGGGAACTACTAAAGAGCTGAGGGCCCAAGGACTGTCTCGTTTTGAGTATTGTGAGTGTTGTTTTAAATAAGCACTCTCACTTTCAGAAAGAGAAAGTATGTTGTGTTGTACATTGTAAACAACTTTCCAAATCATAGTGTGATTTTCAGGGTGGTTCTCATGAACTAGTAAAAACATGAATGTCACCTCTAACATGACTATGTATCTAACTGTGGCATAAAGGTAGCTTTCTTCAGCTCTATTCTGGACCATCAGTTTAGTTTTGTGGATTTCCAGTGCCGGTAACAATTTGCCAGGTGTGTGTGAATTCCTTTTTTGGAATTTGATGTTTTTTCTAGTGCAGTAAGACTTTTTTTGTGTTATATATTTTCATCATTTTAGGTCACATTTTTCACATTTCCTTTTTCCTGAATGGACATACACACTTAATGTGATTGAGATTGTAATTGGCACAATTACAATAATGACTAAAATGATAGTATATATATTAATGGAGTCTTGGATTTATGAAATAAGAATTTCAATTATATTTGGGAACTAATCCTTTGTCATAAAAACTTAAGAGAGCAGCTTACTGATATATTATTGCAGTTAATGAAGCAGAGGCTCTGAGTACATCTATTGTTTAGGGCTGAGTTATTCTTAAAAGAAGTAAATTTGCTGGGAATTTTGTTATGTTTTGTGAAATTGACCTTTTTTCTTTTTCTTTTTCCTCCAAAG
Seq C2 exon
TCCACAGAACCTTAATCAGAGAATGGATGTTTTTTATTTACAACCAGAATGTTCTAGTTCTACAGATAGCCCTGTCTGGTACACATCTACTTCCCTGGACCGGAACACCTTGGAAAATATGCTTGTACGGGTTCTTCTAGTAAAAGATATTTATGATAAAGACAATTATGAACTGGATGAAGACACAGACTAAAAAGGACCATTTCAGAAGCAATGGGATAACACAGCATTAGATAGTCATGCTGCTAGATCTTTACAGGAAAACATTTTAAGTTTACTCCTTCTGTTCTGAGTTTTGTAGCAATGTACCCACACTGGGTATTACCATGTAAATAATCTGTGTGTGAAAGTTGCCATTATTCTATGTAGTGGTTTTAGGATACTTAACAAATACATCAAATTCTTTTTTATTATTATTTATTTGATTAGGTATGTTTGTAACTTTTTACATTACAAATAAGAAGAGAATGTGCCATGTATAAGTTTTTCTTGTTGCACTGCTCTGCTGTTGCAAAGCTCCCTGCAGAGGGCGGGCTTTATGCGTTCCTGACCAGATGGTTGTGTATGGGTAGCACTACTCAAGTTTAGAACTTGCGGTGTCTTTCAGAATTTTTAAAATAAACTGTAAACTAATAGGCTGGGTTTTTTGTTTGTTTGTTTTATGTTTTAGTTACTGAAGCCTTAGCAGGTTATGTAGAGAGATACCATCTTCTGTACCAAAAATAGACAAGAGAATGCTGTTGATACTGGTGTTCTGTAATGTGAACTTATGCTGGTGAAAACAACTTTATGTTCCCCTTATTAAAACTTAGTGTCCTTTTCTCACTTGTGACTTTCTGCATCACCCCATCAATTTAAGGAAAAAAAGTATGTATATATGTGTAAGTAGAGAGAGAGAGTGAGAGAGAGAGAGTGACTATAACTTGAAAACAAGATTAAGACATTTTTCTTTGTAAAATGTCCGGCGACAGTGTAAGACTCTTGTTTTTCTTTCCCACGGCAGCCATCAGCATCTGAGGCCCTCACCTGCCAGGTGTATTACAGCTTGCATAGCACTCTCGAGTGTCACCACTCTCGCTGGAGGTCTTGTGCTGCTTCCAGAAGTGACATGCATATGTGGGGCAGAATTATTTTTAGAAATGCCACTCTTGAAATATTCATTTTAGAAAGTCAGGCTACTTGAAGGGAGACAGTGTCACATTGTTCTATGGCTATTACCAATGGAGAATGCTGACTAGTCCAGGAGACTGAAGAAACAGAAGCTGGTGGATGGTGCCAGTGCCAGTGTCAGAGGAAATCTTGCTTGCTACTAGGTTGTTTGGCTTTGAAATTTAATTACTTCTTATAGAAGATTACATTTAAAATACTTTTGTGCTTCTGCATAGCAGTTTATCTGTTCATAACTTTTAGATTAAGGAAATCTACTTCAAATTATACTTTCTAAAGACTGAGTAAAGTGGTATCTGAAAATTATCAGTTATTTAGCTGACTTTGTATATAGCATGTGTGATGTTTCCTTCTTATTTCTGAATCCTGAAATCACCATGGTGATACTAGTTTTCAAAATAGTTCTGAGGGAAATTGTTTTCCATAGTGACTAGACAGTATATAGCCCTTATCAATTTCTCTCTTCTTTAGCATAAATTTTAGCAAGTAAAGAAATTTTCTCAATCATGATTTTGAAAATTTCACAGGTATAGCTACTGCTCGTTTAAGCAATAACTATCTGAAATGTTTTTGGCATGAAAATTTATAGTGTTCTAAATTTTTATAAGTTTGAATAACTTCAGTCCCTTGGTTTTCTATTTGAATCATCAGACTGATAGTGGCAGCTCCATACTTTACTAAGACAGACCTGCCCCTCGCCTGTTAAGTGAAGCTGGAAACACTTAACAACAGAATGCAGATGTTTCTTGGCTTTTCAGCGCGCCTTCTGAAGCACTTTTACTAGAAATGCATATTGTGATTAAAGACTGGTTAATCCTAACCATCTTCTATTCTTCAGAGTGGTGCTATAGCCCATCAAAAAAAAGCAATAAATTTACCCACAAATGTCACATGTATATTTTACCAATACCATAAATTTCTGCCGTGGTACTACTAAGCACCGTGTCTTGCTATTTAGTTTTTATTGTTTGTACATTTTAGCTTTTCTAAGCAGAAATGCCTACAGAAGTTTGATCGTACATGATAGAGGATCTAGAGCTTGCCTTTGTCTCATGCAATCCAATGATTGATCTACTTGATTCTCAGGGGGAAAGAAAAACAAACTATTTTATGAGAATTGTTCTGGGAAATTTATTTCACCTGGAACACATTTCCTTGATTCTTGGCTGTCTTTAGTGTGTGGCCATAACTAACTGCTGAGAGAAAGGACATTGAAATGATAGTTTATTTTTATTTCTTGGTGACTTCTGATTATAGACAGCATCCTGTAAATATAACTTTATTGTCTTGAGATGTCTATTGAAGATACTATATTTTTCTGTTCTGAACGATTTTGCCACTTAAAATCGTTCAATGAAAAAGATGACTAGCTATTCTGAGGCAGGTGGATTTCCCATGCAAACTGAATCCTTAACGCATTTCAAAAGGCTTTTACTGTATTAGGTAACATGAGATATTAAAGGATTTTTCTAGGCAAGACGCTCAGTCTTTTTTTTTCCCCATAAAAGTACTTTTTACTCAAATTGTAACTCATGTTTTTCTTTCATGAAATGGAGTGGTTATTGGAGTGTTCATACTGAAATAGGAGAAGGGTGCATATTGTCCTATGCTTTCTAATTTACACTGCTTTTTCTGGCTTCCCTTTGTCTTGGCCAATTGTGGTTTGCAAACCGGGGTGACTCATTATATGGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945:ENSMUST00000022511:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.508 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF120123=DUF3504=FE(23.3=100)
A:
NA
C2:
PF120123=DUF3504=PD(27.3=72.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAACCCTTCTAGATGTCCT
R:
TGCTACAAAACTCAGAACAGAAGGA
Band lengths:
357-1769
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types