DreINT0181017 @ danRer10
Intron Retention
Gene
ENSDARG00000027353 | zmym2
Description
zinc finger, MYM-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2408]
Coordinates
chr9:21619442-21622664:-
Coord C1 exon
chr9:21622529-21622664
Coord A exon
chr9:21620192-21622528
Coord C2 exon
chr9:21619442-21620191
Length
2337 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CTCTCTTACTCTCTCCTCAGCCC
3' ss Score
10
Exon sequences
Seq C1 exon
AGCAATCAGGAAGTAAGAGAAGACGTAAAGATTACTGTGACTCAAATTTTGATTCAGACAGCGGTTCAGGGGGATCCGCACACTGTCCTGTTAAGAAGCATGAGTGCCGACTGTATGAGCTTTACCTTTCGAAGTG
Seq A exon
GTGAGTGACGTAAATCTTCCTTATTTGTGATGCATTTGAAGAACTAAGGGCTTTTTCAGAACTGTAAATAGTATTTAATTTAATTTTCTGTAAATTTGTATTTTTCTTTTAGTAACCCTTTACGTTCGGTTCTCATTTTTAAGGGAAACATTTTAAAGTGCACCAAAATGTGGTTCTACAAGTACAACTGCCCCTTATTGCCAGAGTGCACCTGTGTACATTCCTCTACTTCATTTATACTTCATTCTGAGATGTGACACGAAAGCACATTAGTATGTATCTGTCATTCCCACGTTAACTGATAAATGATGTGTATTTAATTATACTCCGCTGTAATAAAGTTAATGTGGGAATCATAATGAGAGCAATTACACAACATATTAAGATGAAGAGGTGCTTCTATTTTATATTAAAAAAGAGCTTTTATTTTAACTGTGATAGTTTCTTGCTGATTTGAATGCAGCTAGTTCAAATTATTTTAAACTGAGTGGTGTCCAGTGATTATAACAATTGCTGTTCACATCCTGAAACATGGTGTTGACACTTGTAATATGAGGACACAGCAGACCTTTGGTGCAGAGGTAGTCAAGCAGTGGTGCCTGTTCAGTTCTTTTCTTAGTGAGGTAATATGATAAATGGGTAGAGTGTCTTAAGTGAACTGGAAAATTAAAATTTGATCTGTAGTAGTCTTACAGGGGTGTAATGGTGCATGTATTTATAAAATTTATGTATTTTAGCCGGCAACTAGCTCTCTGCAACTCAAAATGGTCGCCCACTGAAGCTAAGCAGGGCTGAGCCTGGTCAGCAGTACCTGGATGGGAGACCACATGGGAAAGCTAGGTTGCTGCCAGAAGAGGTGTTAGTGAGACCAGTAGGAGGCAGTGTGGGTCCAAATTCCCCAGTAAATTGATGGGGACTCTACACTGCTCAGTGAGTGCTGTCTTTCAGATGAGATGTAAAATTGTGGTCATTGAAAATCCCAGGATGTCCTTCCAAAAAGAGTAGGGGTTTAACCCACTGGCGTCCTAAACATCCCCATATCATAATTCGCTTCATCACTCTGTCTCTCCACGAATCAGCTGGTGTGCAGTCTGGCGCAAGTCTTGTCGTCAAGTCATCCAGGTGGATGCTGCACACTGGTGGTGGATGAGGAGATTCCCCCAAAAAGTGTGTAAAGCAATTTGAGTGTCCAGAAAAGCGTTATATAAATGCAAGAAATTATTGTTTATTATTATTAGAGAAAATCTTTGTACAAAACTAAATGTTAAGCTTTAACCCCAAGGCCATTTAACTAATATTATGCAAAATTTGTTACCAGGTCTTCATTCTGTTGGAAAGACTTTAAAATATATATTTTTTATACTAGATGGTGCGCTTTTCTATTATTATTATTATTTATTCCTGTTGTCTGCCTATGCATATTTTATGCCTATTGTGGAATTGAATGGATAAATCATGCAGTAATAATTGTGTGGGCTTGTTAGAATGGAGATTGTCAAACTGTTGTTGGTATTTGTGTAATAGTTTGAATGACAGAAATTAAATTATATTAGAAATACCCTTGACCACATGTAACTTTCACACCAGGGGTGGGGTCATAGGACCTTGTAAAAACTATGAACATTTTTTTATTATTTGTTTTTTGTACAAAGTTTGAAAAGTGAGCTTGTATTTTTTTATTTTTTAACGTAGAAGTTCAGAAGCCACTAAACACCTTATTGTTTTCATTAAAACGTTTTAAAATCTGGTAGAGCAGGGGTTCTAAAAATTGGTCCTGGAGGGCTGGTGTACTGCAGATTTTAGCTCCAACTTGCCTCAACACACCTCAACACAACAAGGATGTTTCTAGAAAGCCTTGTAAGAGCTTGATTAGCTTGCCCAAGTTTGTCTGTAACTAAACTTTGCTGGACACCGGCCCACCAGGACCGAGATTGAGAACCCCCCTGTCTTAGATTTACAGTCTAACACAGGTGTTATCTCAGCCAAATCTAAAAAATATATGATGCTCGTGTCATTTCATAGCGTGTAGGACATTTCATCATAACAGGGGAACATCTTGACTATAGTCACAGGTGATGACAGTGAGCACAGTGCTGCGTATGAAGCTACCATTTTGTAAACAAATCAGCATTTTTTAGCAAGGGGTTGCCTTTGAAAATCACTGAGTGTTTGATTATTATTAATATGATTAGAACTGCTGCTGGTGAAAAGATTCGACATCAAAGATGGACATTTTGGACATATCTTCATAGTCTTTTTGGTTTTAGCCAGATTTGCTGAACTTTAATAGTTTTTCTGAACTATTTGTCTGACGCTTCTCTCTTACTCTCTCCTCAG
Seq C2 exon
CCCAGAGTCTGTGAGACAGAGGACAGATTTTTTTTACATGAAGCCAGAGGTGTCTGCGTCGTCGGATAGTCCGCTGTGGTTCAGCTCGACGCCTCTGGAGAAGAGTGTGCTGAGCAGGCTCCTGACTCGAGCGCTGCTGGTCAGAGAGGTCTATAAAGACAACCAGCCTGAAGAGGACGCAGCCTAGAGGCCGATGCACTGAAGACTTCTAACTATGCTATCATGACACCCTGTGCATCACCAAACCAGCTGCTTTCCACACCACACCCTGTCACGCTCCCTTTAAACACACTGATCCCAGTACAGTTATGACATGAGTCCAGTCAGGATGGACATCGATGGGATTATGCTGATTCTGGTCAGTCTTCCCAAAGACCTTGATTCAGACGAGTAGATTTTTTTTCCCCCACCATGAACGTGACTTACAGTATGCTGCTTTCTTCTTTATTTTCCCCCCCTCTCTTCCCTATTTGTTGGAAACTTTTGTTGATGTAGCATTTCTTCTTGTCAGAGTCTAGTCTGTTAGCAGACGAAACACACAGGAACTTTAGGCTGTAATGGAGGTGATGAGGATGTATTCGTTTCTTCCTGCCCAACAAAGCCTTCTAAAGATAAAATTTTATTTATTACTGCTGATCGACGTGTTAAAGACGAGAGTCTGAGATTTTGAGATGACAGGGCAGGGTGTGTGTTGGACACTGCCATGTGTGCAATTTCTCTGGCCTTCCATAAGAGCATTAAAACCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027353:ENSDART00000133469:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF120123=DUF3504=FE(25.9=100)
A:
NA
C2:
PF120123=DUF3504=PD(27.0=74.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]