BtaINT0166012 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002668 | ZNF711
Description
zinc finger protein 711 [Source:HGNC Symbol;Acc:HGNC:13128]
Coordinates
chrX:74985543-74986702:-
Coord C1 exon
chrX:74986547-74986702
Coord A exon
chrX:74985681-74986546
Coord C2 exon
chrX:74985543-74985680
Length
866 bp
Sequences
Splice sites
5' ss Seq
TAGGTATAA
5' ss Score
4.04
3' ss Seq
TACATGTTTTAACTTTTAAGGTG
3' ss Score
8.27
Exon sequences
Seq C1 exon
TAGATGATGTTGGGGAAAAATTAGAGCATATGGGGAACACACCATTAAAAATCAGCAGTGATGGTTCACAAGAAGATGTTAAAGAAGATGGATTTGGTTCAGAAGTAATAAAAGTGTATATATTTAAGGCCGAGGCTGAAGATGATGTTGAAATAG
Seq A exon
GTATAAATACTAAATTTATTGCTATAATGGTTAGGAATTAGAACTTTTCTTTTCTGGAAACTATTCTAATACTGCCTTCAACGTGCAACTTTTTAATAGGTTTCTTTGGGGGTGGAATATTTTAAAATTATATATATATATATGTAATATATATATATATATATAATTGTCTATAAATATGGTACAGAACAAATCATTCTTAGATTCTTTCAAACATGTAGAAGATTCCAGTTGAGATTTCAAAACATGAGTGGAGGGAGTTTGGTTTAGAATAGGAAATTGTGAGTATTTAAGAGTAGTCTAGAGGCAGGCTGCTTGGATTTTAATCCTAGTTCTACCATTTAAGTGACCTTTGGTGAATTACTTAACCTCCTTCTATGTCAGTTTCCCCATCCATAAAATGGTCATAATGGTAGTAACTACCTTATAATAATACTATTGCGAGGATTAAATGGATAAATACATGTGAAAGACAAAGTGCACATATGTTGTTATTTCTTAGTAATGACTGATAATTTAAAGTGAAATTTATATAATAATTTTCTTGACAGTTAGAATATATAGGGGGGAGTATTTTTCTAAAGGAAAATAATATTATCTTCCTTATTATAATATAAAGTGTGCTCAGTCATGTCTGACTCTTTGTGACCCCAGGAACTATAGCCCACCAGGCTCCTCTGTCCGTGGGATTTTCTAGGCAAGAATACTTGAGTAGGTTGCCATTGCCTTCTCTAGGGGATCTTCCAAATCCAGGGATCGAACCTGGGTCTCCTACATTGGCAGGCAGATTCTTTACCACTAGAGCCACCTGGGAGGAAATTATTCCATGATGCTTACTGATTTTGATACATGTTTTAACTTTTAAG
Seq C2 exon
GTGGAACAGAAATTGTCACAGAGAGTGAGTACACCAATGGACATTCTGTAGCTGGAGTGCTTGACCAGAGCCGAATGCAGCGGGAGAAGATGGTTTACATGGCAGTTAAAGATTCTTCTCAAGAAGAAGATGATATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002668:ENSBTAT00000031586:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.434 A=NA C2=0.851
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(17.0=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATGTTGGGGAAAAATTAGAGCA
R:
TCTTGAGAAGAATCTTTAACTGCCA
Band lengths:
278-1144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]