GgaINT0070517 @ galGal3
Intron Retention
Gene
ENSGALG00000006929 | ZNF711
Description
NA
Coordinates
chr4:8749567-8751153:-
Coord C1 exon
chr4:8750995-8751153
Coord A exon
chr4:8749714-8750994
Coord C2 exon
chr4:8749567-8749713
Length
1281 bp
Sequences
Splice sites
5' ss Seq
TAGGTACCT
5' ss Score
4.67
3' ss Seq
GTTTGACTTCTTTTTTTAAGGTG
3' ss Score
8.76
Exon sequences
Seq C1 exon
TGGATGATGTTGGAGAAAAACTGGACCACATAGGAAGCACTCCCTTGAAAATCAGTACTGAGGTGACAAATGATGAAGTGGCTAAAGATGATGGGTTTGGTTCCGAAGTTATCAAAGTATACATATTTAAAGCTGAAGCTGAAGATGATGTTGAAATAG
Seq A exon
GTACCTCTTTAAATTCTGTGTTCTTTTCCAGTAGTATGAAGAGGTGTTTGTGCGTCTTAATATCTTCTAATTCCCTGACAGGATTGTTCGTCAGAGTGATGTTGGTAGGGATTGCCCATATGCTGATAATACTCAACACATTCATTTCAGGTTATTTTTTGATAAGCAGTATTTATTTTCAGTGTTCAAATGTCATTTGTTTATGACCAAGCCCCAGATACAGAAGTGGCTGAACAGCTGCATTTTTTTTATAGATACTTATTTTCTCTGACTTTGCAGGACAGAATGCTGTGAGTAACAAGTGTTCTTAATAGTACTGTTACTGATAGCATTGGTCTCATTGTGTGTCAGTGCACTGCAGTCTGTTGTTACTTGGAAGAATGTCTGAGCCACTTTTGACAAAAGTTATGAAAATGAGCTGTGGTAGTAAAATCACCTGTGTTTTGTCACAATGTGGAAAAGTAAAAATAGAAAAATAAGTACTGAAAAATGATCAGTAGTTTTGGCATACTCACTTATGTATACCAAATGTAAACTGAGAATCAGTGCCCAAAAGGAAGATCTGGCTTTGATTGCCTCTGTGGCACTGCTCATCATTTCTCATTAAGTTTCCATTTTGCTCCCACATTTTTTGTTGGATTCCTTGGTTGTAATTTCAGCCCTCATAAACCTAAGGACCATGGGGGTGCCTCTGTGTCTTCCCTCAAATTCTTCATGGCAGATGATGCCAATCAGAGCTTTGGGGACCATATAGAAATTAAAAGTGGAAAAATAAAGTGTTCTTTATTAACACTGAATCCAGCAAGTCCAGTTAAGAGTGAAACCTCTGTACTGGGGACCAGTATGCTGTATGATCCAGCTTGACTTTAGAAGTAAGACAGTGATATTTGTTTGATGGTTCATTTATGCTGATTGCAGTTTGAGGGTAGTATTATGGGAGCATAGTGCATATTGCTGCTTCTTGTTCTAGCTGTGTGATATCAAATCCTCCTACATGAACTTACTGGACTGATGTTTTGGATTGGTGTTAGTTCCACTGTCATATAATGACCAAATTCCTAAATTTCTTAAAAGTTCCTCTTATCATGCTTGGGATCTGACTTCTGTTGCCTGGTGATGGGGTTACTACTATGTTAGTTTGTCATTTTGGATGCCATTGCTTTCAAAAGCATGAGTTTTATACAATAGCTTTGTTGTAAATAAGGAATACTTTGATCTGAACTTAATGTCAAGAATGGCTTTGTTTACATGCACTTAAGGTGTTTGACTTCTTTTTTTAAG
Seq C2 exon
GTGGGACAGAAATTGTCACAGAGAGTGATTTTCACAATGGACATTCAGTAGCTGGAGTAATTGAACAAGGAGGTGTTGGTAGAATGCAGCGAGAAAAAATGGTTTACATGGCTGTTAAGGACTCTTCTCAGGAAGATGAAGATATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006929:ENSGALT00000011226:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.407 A=NA C2=0.785
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(21.5=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTTGGAGAAAAACTGGACCA
R:
CCTGAGAAGAGTCCTTAACAGCC
Band lengths:
287-1568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]