MmuINT0179778 @ mm9
Intron Retention
Gene
ENSMUSG00000025529 | Zfp711
Description
zinc finger protein 711 [Source:MGI Symbol;Acc:MGI:3045342]
Coordinates
chrX:109737561-109738485:+
Coord C1 exon
chrX:109737561-109737716
Coord A exon
chrX:109737717-109738347
Coord C2 exon
chrX:109738348-109738485
Length
631 bp
Sequences
Splice sites
5' ss Seq
TAGGTACAA
5' ss Score
3.23
3' ss Seq
ATGTGTTTTTAAATTTTAAGGTG
3' ss Score
8.82
Exon sequences
Seq C1 exon
TGGATGATGTGGGAGAGAAGTTAGAGCATATGGGGAACACGCCATTGAAAATCGCTAGCGATGGTTCACAAGAAGATGTTAAAGAAGATGCATTTGGTTCAGAAGTGATAAAAGTATATATCTTTAAAGCAGAGGCTGAAGATGATGTTGAAATAG
Seq A exon
GTACAAAACAATTTTAATTCCATGATAGAATTCTTATCTTTCATGGGGATTATTCTAAAATTCTCAAAAGACAAAAAATATTCATAGGCTTCTTAAGTGTATTTTTAAAACTGTATATGAATATCTACATATAAAGTGGGAATGGGAAAAATGTCACTCAGATTTTTTTCAGATATGAAACTATTATGGCAGAAAATTTTCAAACAAATGAAAATAATTTGAATTAGAGAAAAAATTATGATGGGTGTGTAAGAGCATTGAAGACAGAGGAAGATATTTTGTATTTTAAACCTACTTCTAGCACTTAACTGAGAAAAATCCTCAATAACTTTTATGTTCTTCTACTTCCTTGTGTCCTCATCTGTATGATGGCCATAATGGCAATGGTACAATAAGGTTTTTATGAGAAATGAATGGGTAAATATGTATGAAATTTTTGTAGTGCTTGTCATATAAATATGGTATAGCTGTTAACTGAAATGAATGATGAATGTCTAAGGTATAATTTACATGCATATTTTAATGGCACTTTGAAGTTTGTTAGAATATTTATATACCCTGTATATCCTTATTAATTCGGGGATTTATTCCATGATATATTTTGAGTTTATATGTGTTTTTAAATTTTAAG
Seq C2 exon
GTGGGACAGAAATTGTCACAGAGAGTGAATACAGCAGTGGCCATTCTGTAGCTGGAGTGCTTGACCAGAGCCGAATGCAGCGAGAGAAAATGGTTTACATGGCAGTGAAAGATTCTTCCCAGGAACAGGATGATATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025529-Zfp711:NM_177747:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=NA C2=0.770
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(17.1=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGATGTGGGAGAGAAGT
R:
TGATATCATCCTGTTCCTGGGA
Band lengths:
294-925
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: