RnoINT0168622 @ rn6
Intron Retention
Gene
ENSRNOG00000022391 | Zfp711
Description
zinc finger protein 711 [Source:RGD Symbol;Acc:1562768]
Coordinates
chrX:84086722-84087677:+
Coord C1 exon
chrX:84086722-84086877
Coord A exon
chrX:84086878-84087539
Coord C2 exon
chrX:84087540-84087677
Length
662 bp
Sequences
Splice sites
5' ss Seq
TAGGTACAA
5' ss Score
3.23
3' ss Seq
TACGTGTTTTAATTTTTAAGGTG
3' ss Score
9.27
Exon sequences
Seq C1 exon
TGGATGATGTGGGAGAGAAGTTAGAGCATATGGGGAACACACCATTAAAAATTGGTAGTGATGGTTCACAAGAAGATGTTAAAGAAGATGGATTTGGTTCAGAAGTGATTAAAGTATATATATTTAAAGCAGAGGCTGAAGATGATGTTGAAATAG
Seq A exon
GTACAAAACTATTTTAATTCCATGATATAAGAGACATTAGAATTCTCATCTTTCATGAGGATTATCTAAAATTCTCAAAAGACAAAAATGTTCATAGGCTTCTTAGTGTATTTTTAAAACTGTATATGAATATCTACATATAAAATGGGAATTGGGAAAATGTCACTCAGAATTTTTCAAATGTGAAACTTATGGCAGAAAATTTTAAAACAAATGAAAATAATTTGTATTAGAATAAGAATTATGAATTATGATGAGTGTGTAAGAGCATTGATGACAGGAATGTATTTGGGATTTTAAACCTACTTCTAGCACTTAAGTGAGAAAAACCTTCAATAGTTTGTATGTTCTACTACCTTGTTTTCTCAAATCTGTATGATGACCATAATGACAATGACATAATAAGGTTTTTATGAGGAATGATTGGATATATATAATGTATATCCATATATATATATATATATATATCTTTTATAGTGCTTGTTATAAATGTGATATAATTATTAAATGAAATTAGTGATAAATGTTTAAGGTATAATTTACATGAGCATTTTAATGACACTTTGAAGTTTGTTAGAATATTTATATGCCCTGTGTATCCTTATCAATTGAGGGATTTATTCCATGATATAATCTAGTTTATACGTGTTTTAATTTTTAAG
Seq C2 exon
GTGGGACAGAAATTGTCACTGAGAGTGAATACACCAGTGGACATTCTGTAGCTGGAGTGCTTGACCAGAGCCGAATGCAGCGAGAGAAAATGGTTTACATGGCAGTGAAAGATTCTTCCCAAGAAGAAGATGATATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022391:ENSRNOT00000046364:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.434 A=NA C2=0.596
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(14.9=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGATGTGGGAGAGAAGT
R:
TTGGGAAGAATCTTTCACTGCCA
Band lengths:
278-940
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]