MmuINT0179778 @ mm10
Intron Retention
Gene
ENSMUSG00000025529 | Zfp711
Description
zinc finger protein 711 [Source:MGI Symbol;Acc:MGI:3045342]
Coordinates
chrX:112623952-112626073:+
Coord C1 exon
chrX:112623952-112624107
Coord A exon
chrX:112624108-112624738
Coord C2 exon
chrX:112624739-112626073
Length
631 bp
Sequences
Splice sites
5' ss Seq
TAGGTACAA
5' ss Score
3.23
3' ss Seq
ATGTGTTTTTAAATTTTAAGGTG
3' ss Score
8.82
Exon sequences
Seq C1 exon
TGGATGATGTGGGAGAGAAGTTAGAGCATATGGGGAACACGCCATTGAAAATCGCTAGCGATGGTTCACAAGAAGATGTTAAAGAAGATGCATTTGGTTCAGAAGTGATAAAAGTATATATCTTTAAAGCAGAGGCTGAAGATGATGTTGAAATAG
Seq A exon
GTACAAAACAATTTTAATTCCATGATAGAATTCTTATCTTTCATGGGGATTATTCTAAAATTCTCAAAAGACAAAAAATATTCATAGGCTTCTTAAGTGTATTTTTAAAACTGTATATGAATATCTACATATAAAGTGGGAATGGGAAAAATGTCACTCAGATTTTTTTCAGATATGAAACTATTATGGCAGAAAATTTTCAAACAAATGAAAATAATTTGAATTAGAGAAAAAATTATGATGGGTGTGTAAGAGCATTGAAGACAGAGGAAGATATTTTGTATTTTAAACCTACTTCTAGCACTTAACTGAGAAAAATCCTCAATAACTTTTATGTTCTTCTACTTCCTTGTGTCCTCATCTGTATGATGGCCATAATGGCAATGGTACAATAAGGTTTTTATGAGAAATGAATGGGTAAATATGTATGAAATTTTTGTAGTGCTTGTCATATAAATATGGTATAGCTGTTAACTGAAATGAATGATGAATGTCTAAGGTATAATTTACATGCATATTTTAATGGCACTTTGAAGTTTGTTAGAATATTTATATACCCTGTATATCCTTATTAATTCGGGGATTTATTCCATGATATATTTTGAGTTTATATGTGTTTTTAAATTTTAAG
Seq C2 exon
GTGGGACAGAAATTGTCACAGAGAGTGAATACAGCAGTGGCCATTCTGTAGCTGGAGTGCTTGACCAGAGCCGAATGCAGCGAGAGAAAATGGTTTACATGGCAGTGAAAGATTCTTCCCAGGAACAGGATGATATCAGTAAGATAAAGGGCACTGTAGTGACTTACAAGAAACACTAACACAACTTTAAATGCAATTGATAGCAACCATAGATGCACTGAATATCAGCTACGTTAAAAGCAATAAGCCTGTTCTTGCAAATATTTAAAAGTATGGGTCCTTTTAGACATTCCTGAACCAATATATTATTACTCAGATAAGAATACATGAACAATACATCTCAAGTCATATGTTACAAAGCGATGAAGAGTTTATAGTTTTGATGTAATGAAGTTCAAAATACATAGAAATTGAATCATATATTAAATATATATTATAGACATGTGTAGTGCACATAAATTCACAAGGCATACAGACACATAGGCATAAATTTAGAAATATTTATATCTGTTAAGTTTTATTTCATTTTAATAATTAATCTCTGAGGTAGAAAGTATTATTCCTTTTTTATAAGACAAGTAAATCCTCAGGGAAAATAAGTTGCCCAAGACAACACTAAAACTTGAGTACTTGTCTAACACTACTGCCAGTGTTTTGTCTACATGACAGTAAGCACTTTTGGCCTCTTTGGATTTAGCAGTGAAAGGGCTAACTGGTTGATCTCCTGTCACTGAGAAGTTGGGTGGGTAAGTATTTATACAAGCCGTTCTGCTAGGATGTTAATTTATTATGCTGTTCATGGGTAATTGGGGTAAAGGGCTTCCTGGGACTCAGGATCACAGGGTGAAATATTCTATTCATAGGCTTTCTTTTGTCATTCTTCATGCTTTTTGTTTATTTTTTCAAGACATTTTATTTTTTTCCTACATTGTCTTCATCTCACTTTTCAGTCTTGTCTGAGGTTGTATTTGTTTCCTTGCCATGCTGACAAAATGCTATTTTATCACACAAGAGCAAGACCCTCCTTTTCATAGAATTTTCTCGATAGTGCTATGTTCTATTTATGCTGCACTATAACAACTACTCCTTATGTATTTCTCTAACAACCACAGAGAGCTGAATTCTACCTCCATGTCACAGCTGAAACTATCAAAACACTTAGTGCTAGGGAACAAAAGCGTTTATTTAAGTTATGCTTATTTCATCTGAAATCTTAAAATTTTTAACTCACTCATTAAATGAGGCATGATAGGCTATGGGAAACTGAGGTACAGGTTTATCTAATGCCATAATTTGATAGGAACATGGAAAACTTAGACTAGCATCTGTGGTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025529:ENSMUST00000151972:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.416 A=NA C2=0.754
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(17.1=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGAACACGCCATTGAAAA
R:
TTCAGTGCATCTATGGTTGCT
Band lengths:
348-979
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types