HsaINT0188217 @ hg19
Intron Retention
Gene
ENSG00000147180 | ZNF711
Description
zinc finger protein 711 [Source:HGNC Symbol;Acc:13128]
Coordinates
chrX:84519281-84520261:+
Coord C1 exon
chrX:84519281-84519436
Coord A exon
chrX:84519437-84520123
Coord C2 exon
chrX:84520124-84520261
Length
687 bp
Sequences
Splice sites
5' ss Seq
TAGGTACAA
5' ss Score
3.23
3' ss Seq
TGCGTGTTTTAATTTTTAAGGTG
3' ss Score
9.82
Exon sequences
Seq C1 exon
TGGATGATGTTGGAGAAAAATTAGAGCATATGGGGAATACACCATTAAAAATTGGCAGTGATGGTTCACAAGAAGATGCTAAAGAAGATGGGTTTGGTTCTGAAGTTATAAAAGTGTATATATTTAAAGCGGAGGCTGAAGATGATGTTGAAATAG
Seq A exon
GTACAAACACTAATTTTAATTTATTGCTCCAATAGGAGTTATAATTTATTATATTTTCTGGGGACTAGTCTAAAAATGTTCTCAAAGCATGGGTTTTTTTAATACGTTTTCTTTGGGAATAGTCTACTTTTAAAAATTGTATATGAATATAAAGCAGGAATGCAGAATATGTCATTCTTTGATTCTTTCAAGCATGAGTAGAATACTGCAGCAGAAAATATCAAAACAAATGATTGGAGAGGATTTGGTTTAGATTAAGAAACTATAATGAGTGTTTACAAGCATGGATTCTAGAGGCAGGCTGCTTGGGTTTTAAATAGGTCCTGTCACTTAGCTGAGTGACCTTTGATAAATTACTTAACCCCCTTCTGTCTGTTTCCTCATCCATAAAATTCTCATAATAATAAAAGCTACCTATAGGGCTGTTGTGAGGGTTAAAGGGGTAAATATGTATAAAAGACTTATATACTGCTTGGCATATAAGCTTGATGTAAGGATTAACAATTGTCATTTCTCAGTGATAGCTGAAAATTTAAAGTATAATTTATATGAAAATGTTCTTGGCACTTTGAAATTTATTTTGGAATTTATTTTTTTTCTAAGAAATATTTCTATATATTCTTCTTATTAATTTAGGTGGTTATTCCATGATACTTCTCTATTTTAATGCGTGTTTTAATTTTTAAG
Seq C2 exon
GTGGAACAGAAATTGTCACAGAGAGTGAGTACACCAGTGGACATTCAGTAGCTGGAGTGCTTGACCAGAGCCGAATGCAGCGGGAGAAGATGGTTTACATGGCAGTTAAAGATTCTTCTCAAGAAGAAGATGATATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147180-ZNF711:NM_021998:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.434 A=NA C2=0.676
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(17.0=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGATGTTGGAGAAAAATTAGAGC
R:
TCTTGAGAAGAATCTTTAACTGCCA
Band lengths:
279-966
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)