GgaINT0070517 @ galGal4
Intron Retention
Gene
ENSGALG00000006929 | ZNF6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NHJ7]
Coordinates
chr4:8664692-8666278:-
Coord C1 exon
chr4:8666120-8666278
Coord A exon
chr4:8664839-8666119
Coord C2 exon
chr4:8664692-8664838
Length
1281 bp
Sequences
Splice sites
5' ss Seq
TAGGTACCT
5' ss Score
4.67
3' ss Seq
GTTTGACTTCTTTTTTTAAGGTG
3' ss Score
8.76
Exon sequences
Seq C1 exon
TGGATGATGTTGGAGAAAAACTGGACCACATAGGAAGCACTCCCTTGAAAATCAGTACTGAGGTGACAAATGATGAAGTGGCTAAAGATGATGGGTTTGGTTCCGAAGTTATCAAAGTATACATATTTAAAGCTGAAGCTGAAGATGATGTTGAAATAG
Seq A exon
GTACCTCTTTAAATTCTGTGTTCTTTTCCAGTAGTATGAAGAGGTGTTTGTGCGTCTTAATATCTTCTAATTCCCTGACAGGATTGTTCGTCAGAGTGATGTTGGTAGGGATTGCCCATATGCTGATAATACTCAACACATTCATTTCAGGTTATTTTTTGATAAGCAGTATTTATTTTCAGTGTTCAAATGTCATTTGTTTATGACCAAGCCCCAGATACAGAAGTGGCTGAACAGCTGCATTTTTTTTATAGATACTTATTTTCTCTGACTTTGCAGGACAGAATGCTGTGAGTAACAAGTGTTCTTAATAGTACTGTTACTGATAGCATTGGTCTCATTGTGTGTCAGTGCACTGCAGTCTGTTGTTACTTGGAAGAATGTCTGAGCCACTTTTGACAAAAGTTATGAAAATGAGCTGTGGTAGTAAAATCACCTGTGTTTTGTCACAATGTGGAAAAGTAAAAATAGAAAAATAAGTACTGAAAAATGATCAGTAGTTTTGGCATACTCACTTATGTATACCAAATGTAAACTGAGAATCAGTGCCCAAAAGGAAGATCTGGCTTTGATTGCCTCTGTGGCACTGCTCATCATTTCTCATTAAGTTTCCATTTTGCTCCCACATTTTTTGTTGGATTCCTTGGTTGTAATTTCAGCCCTCATAAACCTAAGGACCATGGGGGTGCCTCTGTGTCTTCCCTCAAATTCTTCATGGCAGATGATGCCAATCAGAGCTTTGGGGACCATATAGAAATTAAAAGTGGAAAAATAAAGTGTTCTTTATTAACACTGAATCCAGCAAGTCCAGTTAAGAGTGAAACCTCTGTACTGGGGACCAGTATGCTGTATGATCCAGCTTGACTTTAGAAGTAAGACAGTGATATTTGTTTGATGGTTCATTTATGCTGATTGCAGTTTGAGGGTAGTATTATGGGAGCATAGTGCATATTGCTGCTTCTTGTTCTAGCTGTGTGATATCAAATCCTCCTACATGAACTTACTGGACTGATGTTTTGGATTGGTGTTAGTTCCACTGTCATATAATGACCAAATTCCTAAATTTCTTAAAAGTTCCTCTTATCATGCTTGGGATCTGACTTCTGTTGCCTGGTGATGGGGTTACTACTATGTTAGTTTGTCATTTTGGATGCCATTGCTTTCAAAAGCATGAGTTTTATACAATAGCTTTGTTGTAAATAAGGAATACTTTGATCTGAACTTAATGTCAAGAATGGCTTTGTTTACATGCACTTAAGGTGTTTGACTTCTTTTTTTAAG
Seq C2 exon
GTGGGACAGAAATTGTCACAGAGAGTGATTTTCACAATGGACATTCAGTAGCTGGAGTAATTGAACAAGGAGGTGTTGGTAGAATGCAGCGAGAAAAAATGGTTTACATGGCTGTTAAGGACTCTTCTCAGGAAGATGAAGATATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006929:ENSGALT00000011226:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=NA C2=0.340
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(15.8=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(14.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTTGGAGAAAAACTGGACCA
R:
CCTGAGAAGAGTCCTTAACAGCC
Band lengths:
287-1568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]