HsaINT0188217 @ hg38
Intron Retention
Gene
ENSG00000147180 | ZNF711
Description
zinc finger protein 711 [Source:HGNC Symbol;Acc:HGNC:13128]
Coordinates
chrX:85264275-85265255:+
Coord C1 exon
chrX:85264275-85264430
Coord A exon
chrX:85264431-85265117
Coord C2 exon
chrX:85265118-85265255
Length
687 bp
Sequences
Splice sites
5' ss Seq
TAGGTACAA
5' ss Score
3.23
3' ss Seq
TGCGTGTTTTAATTTTTAAGGTG
3' ss Score
9.82
Exon sequences
Seq C1 exon
TGGATGATGTTGGAGAAAAATTAGAGCATATGGGGAATACACCATTAAAAATTGGCAGTGATGGTTCACAAGAAGATGCTAAAGAAGATGGGTTTGGTTCTGAAGTTATAAAAGTGTATATATTTAAAGCGGAGGCTGAAGATGATGTTGAAATAG
Seq A exon
GTACAAACACTAATTTTAATTTATTGCTCCAATAGGAGTTATAATTTATTATATTTTCTGGGGACTAGTCTAAAAATGTTCTCAAAGCATGGGTTTTTTTAATACGTTTTCTTTGGGAATAGTCTACTTTTAAAAATTGTATATGAATATAAAGCAGGAATGCAGAATATGTCATTCTTTGATTCTTTCAAGCATGAGTAGAATACTGCAGCAGAAAATATCAAAACAAATGATTGGAGAGGATTTGGTTTAGATTAAGAAACTATAATGAGTGTTTACAAGCATGGATTCTAGAGGCAGGCTGCTTGGGTTTTAAATAGGTCCTGTCACTTAGCTGAGTGACCTTTGATAAATTACTTAACCCCCTTCTGTCTGTTTCCTCATCCATAAAATTCTCATAATAATAAAAGCTACCTATAGGGCTGTTGTGAGGGTTAAAGGGGTAAATATGTATAAAAGACTTATATACTGCTTGGCATATAAGCTTGATGTAAGGATTAACAATTGTCATTTCTCAGTGATAGCTGAAAATTTAAAGTATAATTTATATGAAAATGTTCTTGGCACTTTGAAATTTATTTTGGAATTTATTTTTTTTCTAAGAAATATTTCTATATATTCTTCTTATTAATTTAGGTGGTTATTCCATGATACTTCTCTATTTTAATGCGTGTTTTAATTTTTAAG
Seq C2 exon
GTGGAACAGAAATTGTCACAGAGAGTGAGTACACCAGTGGACATTCAGTAGCTGGAGTGCTTGACCAGAGCCGAATGCAGCGGGAGAAGATGGTTTACATGGCAGTTAAAGATTCTTCTCAAGAAGAAGATGATATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147180:ENST00000373165:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.434 A=NA C2=0.706
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(17.0=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGATGTTGGAGAAAAATTAGAGC
R:
TCTTGAGAAGAATCTTTAACTGCCA
Band lengths:
279-966
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains