DreEX0003531 @ danRer10
Exon Skipping
Gene
ENSDARG00000014592 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr21:8338408-8351425:+
Coord C1 exon
chr21:8338408-8338472
Coord A exon
chr21:8346200-8346243
Coord C2 exon
chr21:8351376-8351425
Length
44 bp
Sequences
Splice sites
3' ss Seq
GATTTCTGTATTATTTTCAGGAC
3' ss Score
9.18
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GGAGAGCCCTGGGTCAGCCTTTGAGGTGTACATGGAGGTGGTGCATTCTGGGACGGCTGGCTCTG
Seq A exon
GACTAGAGGTGCGCAGAAGTTTCCCCGACACATACACTGAACAG
Seq C2 exon
GAAACGCTACAGACTATCCCAAAGTTTTGTTTCCCTTTTAATATGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014592_MULTIEX1-1/18=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0345613=uDENN=PU(20.3=80.0)
C2:
PF0345613=uDENN=FE(27.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGCCCTGGGTCAGC
R:
TATTAAAAGGGAAACAAAACTTTGGG
Band lengths:
108-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]