DreEX0008564 @ danRer10
Exon Skipping
Gene
ENSDARG00000069765 | SYNGAP1 (2 of 2)
Description
synaptic Ras GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:11497]
Coordinates
chr16:45623304-45647450:+
Coord C1 exon
chr16:45623304-45623398
Coord A exon
chr16:45636781-45636902
Coord C2 exon
chr16:45647297-45647450
Length
122 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTTTTTTCTTCCCAGAGT
3' ss Score
10.25
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
ACGCCGCTCGGCTCCGGCGGAAAAGCATCGCCACCGGGAAGCAGCCAAGCATGGAGATCCCACCCACTGCCCCCCCACAACCCTTCCGACAATCC
Seq A exon
AGTTTCCTCAGTAGAAGACTGAAGGGGTCCATTAAACGGGCCAAGAGTCAGCCCAAGCTGGACCGAACCAGCAGCTTCCGCCACATGATCCTCCCTCGCTTCCGCAGCGCCGACCAGGAGCG
Seq C2 exon
GACTCGTCTGATGCAGAGCTTCAAAGAATCACACTCCCATGAGTCTTTGCTGTCTCCCAGCAGCGCAGCCGAGGCCTTGGATTTGACACTTGATGAAGACGCCATCATCAAGCCTGTTCACTCCAGTATATTGGGACAGGAGTACTGTTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069765-'2-3,'2-2,4-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.423 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(26.1=70.7)
C2:
PF0016924=PH=FE(45.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCGGCGGAAAAGCATC
R:
TCCTGTCCCAATATACTGGAGTGA
Band lengths:
226-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]