DreEX0040905 @ danRer10
Exon Skipping
Gene
ENSDARG00000062640 | kcnh8
Description
potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:ZFIN;Acc:ZDB-GENE-060503-204]
Coordinates
chr19:20956848-20981163:+
Coord C1 exon
chr19:20956848-20957081
Coord A exon
chr19:20972167-20972298
Coord C2 exon
chr19:20981033-20981163
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCAATTCTACTGCAGGTA
3' ss Score
9.48
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
ACAGCAACTTCATTCTGGCCAATGCACAAGTGTCCAAAGGCTTCCCGATTGTGTACTGCTCGGATGGATTCTGTGAACTCACTGGATTTGCCCGAACTGAGGTCATGCAACAGAGCTGCGCATGCAAGTTTCTGTACGGACCGGAGACCAGCGAGCACATAATTCTTCACGTGGACGCGGCACTCGAGGAACGGAGCGAGCTCAAGGAGGAAATAATGTTCTACAAAAAGAGTG
Seq A exon
GTAGTGTTTTTTGGTGTCTGCTGGATATTGTGCCTATTAAGAATGAGAAAGGAGATGTCGTGCTGTTCCTCGCCTCTTTTAAAGACGTCACCGACACCAAAGCCAAATCTACACTTGAGGAGAAGAAAGAAG
Seq C2 exon
AGTGCCGGCGTGAGAAGGTCAAGGGAGACTCTCCGTTTGGCTCCACGAGACTGCGATCAAGCACAGTTCTCTACCACATTTCAGGACACCTGCACAACCGTCAGAAACAGAGCAAAATTAAACTTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062640-'3-2,'3-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.068
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(70.6=97.5)
A:
PF134261=PAS_9=PD(28.4=68.9)
C2:
PF084125=Ion_trans_N=PU(13.7=22.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCCCGAACTGAGGTCATG
R:
TTTCTGACGGTTGTGCAGGTG
Band lengths:
255-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]