RnoEX0046056 @ rn6
Exon Skipping
Gene
ENSRNOG00000058626 | Kcnh8
Description
potassium voltage-gated channel subfamily H member 8 [Source:RGD Symbol;Acc:2549]
Coordinates
chr9:3415375-3510054:-
Coord C1 exon
chr9:3509821-3510054
Coord A exon
chr9:3461635-3461766
Coord C2 exon
chr9:3415375-3415502
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTATCACCTTTGCAGGGG
3' ss Score
9.19
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ATAGCAACTTCATCCTGGCCAATGCCCAAGTGGCAAAAGGTTTCCCCATAGTCTACTGTTCAGATGGCTTCTGTGAGCTGGCTGGGTTTGCTCGAACTGAAGTCATGCAGAAGAGTTGCAGCTGCAAGTTTCTGTTTGGGGTGGAGACCAACGAGCAGCTGATGCTTCAGATCGAAAAGTCCCTGGAGGAGAAGGTAGAGTTCAAAGGAGAAATTATGTTCTACAAGAAGAATG
Seq A exon
GGGCTCCATTTTGGTGCCTGTTGGATATCGTTCCTATAAAGAATGAGAAAGGAGATGTGGTCCTTTTCCTGGCCTCATTCAAAGATATAACAGACACGAAAGTGAAGATTACTTCAGAAGATAAAAAAGAAG
Seq C2 exon
ACAGAGCCAAAGGAAGATCAAGAGCAGGGAGCCACTTCGACTCAGCCCGCAGACGGAGCCGAGCAGTCCTTTATCACATCTCAGGACACCTGCAAAGAAGAGAAAAGAACAAATTGAAAATAAATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058626-'1-3,'1-1,2-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.233
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(70.6=97.5)
A:
PF134261=PAS_9=PD(28.4=68.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGGCTTCTGTGAGCTGG
R:
GATAAAGGACTGCTCGGCTCC
Band lengths:
249-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]