GgaEX1031303 @ galGal4
Exon Skipping
Gene
ENSGALG00000011262 | KCNH8
Description
potassium channel, voltage gated eag related subfamily H, member 8 [Source:HGNC Symbol;Acc:HGNC:18864]
Coordinates
chr2:36079003-36102786:+
Coord C1 exon
chr2:36079003-36079240
Coord A exon
chr2:36094148-36094279
Coord C2 exon
chr2:36102659-36102786
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTTATTCTTTATCCTTACAGGGT
3' ss Score
9.98
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
ACAGATAGTAACTTCATCCTTGCAAACGCACAGGTGGCTAAGGGATTCCCTATTGTTTACTGCTCAGATGGCTTCTGTGATCTTGCTGGATTTGCACGAACTGAAGTCATGCAGAAGAGCTGCAGCTGCAAATTTTTACTTGGTGCTGAAACAAATGAGCAGATGATCCTTCAGATTGAGAAATCCTTGGAAGAAAAGGTAGAATTCAAAGGAGAAATCATGTTCTATAAAAAGAATG
Seq A exon
GGTCTTCATTCTGGTGCCTATTGGATATTGTTCCTATAAAGAATGAAAAAGGAGATGTAGTACTATTTCTGGCCTCTTTCAAAGATATAACAGACACAAAAGTGAAGATTGCTGCAGAAGACAAAAAGGAAG
Seq C2 exon
AGAAATGGAAAGGAAGAGGAAGAGCAGGGTCACATTTTGATTCAGCACGAAGACGGAGTAGAGCTGTCCTTTATCATATCTCTGGACACCTACAAAGAAGAGAGAAGAACAAATTAAAAATTAATAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011262-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(70.6=96.2)
A:
PF134261=PAS_9=PD(28.4=68.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGGTGGCTAAGGGATTC
R:
GACCCTGCTCTTCCTCTTCCT
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]