MmuEX6078361 @ mm9
Exon Skipping
Gene
ENSMUSG00000035580 | Kcnh8
Description
potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:MGI Symbol;Acc:MGI:2445160]
Coordinates
chr17:52865084-52936871:+
Coord C1 exon
chr17:52865084-52865321
Coord A exon
chr17:52892898-52893029
Coord C2 exon
chr17:52936744-52936871
Length
132 bp
Sequences
Splice sites
3' ss Seq
TATTTCTCTCACCTTTACAGGGG
3' ss Score
10.31
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ACAGATAGCAACTTCATCCTGGCCAATGCCCAAGTGGCAAAGGGTTTCCCCATAGTCTACTGTTCAGATGGCTTCTGTGAGCTGGCCGGGTTTGCACGAACTGAAGTCATGCAGAAGAGCTGCAGCTGCAAGTTTTTGTTTGGGGTGGAGACCAACGAGCAGCTGATGCTTCAGATAGAAAAGTCCCTGGAGGAGAAAGTAGAATTCAAAGGAGAAATTATGTTCTACAAGAAGAATG
Seq A exon
GGGCTCCATTTTGGTGCCTGCTGGATATCGTTCCTATAAAGAATGAGAAAGGAGATGTAGTCCTTTTCCTGGCCTCATTCAAAGACATAACAGACACGAAAGTGAAGATTACATCAGAAGATAAAAAAGAAG
Seq C2 exon
ACAGAACCAAAGGAAGATCAAGAGCAGGGAGCCACTTTGACTCAGCCCGGAGACGGAGCCGAGCCGTCCTTTATCACATCTCAGGACACCTTCAAAGAAGAGAAAAGAACAAATTGAAAATAAATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035580-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.256
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(70.6=96.2)
A:
PF134261=PAS_9=PD(28.4=68.9)
C2:
PF084125=Ion_trans_N=PU(17.1=30.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGGCTTCTGTGAGCTGG
R:
ATGTGATAAAGGACGGCTCGG
Band lengths:
253-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: