GgaEX1031303 @ galGal3
Exon Skipping
Gene
ENSGALG00000011262 | KCNH8
Description
NA
Coordinates
chr2:35538271-35562354:+
Coord C1 exon
chr2:35538271-35538512
Coord A exon
chr2:35553716-35553847
Coord C2 exon
chr2:35562227-35562354
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTTATTCTTTATCCTTACAGGGT
3' ss Score
9.98
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
TTCTACAGATAGTAACTTCATCCTTGCAAACGCACAGGTGGCTAAGGGATTCCCTATTGTTTACTGCTCAGATGGCTTCTGTGATCTTGCTGGATTTGCACGAACTGAAGTCATGCAGAAGAGCTGCAGCTGCAAATTTTTACTTGGTGCTGAAACAAATGAGCAGATGATCCTTCAGATTGAGAAATCCTTGGAAGAAAAGGTAGAATTCAAAGGAGAAATCATGTTCTATAAAAAGAATG
Seq A exon
GGTCTTCATTCTGGTGCCTATTGGATATTGTTCCTATAAAGAATGAAAAAGGAGATGTAGTACTATTTCTGGCCTCTTTCAAAGATATAACAGACACAAAAGTGAAGATTGCTGCAGAAGACAAAAAGGAAG
Seq C2 exon
AGAAATGGAAAGGAAGAGGAAGAGCAGGGTCACATTTTGATTCAGCACGAAGACGGAGTAGAGCTGTCCTTTATCATATCTCTGGACACCTACAAAGAAGAGAGAAGAACAAATTAAAAATTAATAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011262-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=FE(68.1=100)
A:
PF134261=PAS_9=PD(26.1=68.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGGTGGCTAAGGGATTC
R:
GACCCTGCTCTTCCTCTTCCT
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]