HsaEX6054699 @ hg38
Exon Skipping
Gene
ENSG00000183960 | KCNH8
Description
potassium voltage-gated channel subfamily H member 8 [Source:HGNC Symbol;Acc:HGNC:18864]
Coordinates
chr3:19253654-19342714:+
Coord C1 exon
chr3:19253654-19253887
Coord A exon
chr3:19281198-19281329
Coord C2 exon
chr3:19342587-19342714
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTTACTGTTGCAGGGT
3' ss Score
10.35
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
ATAGCAACTTCATCCTTGCCAATGCCCAGGTGGCTAAGGGTTTCCCCATAGTCTACTGTTCCGATGGCTTCTGCGAGCTTGCTGGATTTGCCCGAACTGAAGTCATGCAGAAGAGTTGTAGCTGCAAGTTCTTATTTGGGGTTGAAACCAATGAGCAACTGATGCTTCAAATAGAAAAGTCACTGGAGGAGAAAACAGAATTCAAAGGAGAAATTATGTTCTACAAGAAAAACG
Seq A exon
GGTCTCCATTTTGGTGCCTACTGGATATTGTTCCCATAAAGAATGAAAAAGGAGATGTAGTACTTTTTCTGGCCTCGTTCAAAGATATAACAGATACAAAAGTGAAGATTACTCCAGAAGATAAAAAAGAAG
Seq C2 exon
ACAAAGTCAAAGGAAGATCAAGAGCAGGGACCCACTTTGACTCAGCCCGGAGACGGAGTCGAGCAGTCCTTTATCACATCTCTGGGCACCTGCAAAGAAGAGAAAAGAACAAATTGAAAATAAATAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183960-'7-11,'7-6,11-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.119 C2=0.186
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(70.6=97.5)
A:
PF134261=PAS_9=PD(28.4=68.9)
C2:
NO
Main Skipping Isoform:
ENST00000328405fB17988
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCCGAACTGAAGTCATGC
R:
TTCTCTTCTTTGCAGGTGCCC
Band lengths:
251-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains