MmuEX6078361 @ mm10
Exon Skipping
Gene
ENSMUSG00000035580 | Kcnh8
Description
potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:MGI Symbol;Acc:MGI:2445160]
Coordinates
chr17:52725763-52797546:+
Coord C1 exon
chr17:52725763-52725996
Coord A exon
chr17:52753573-52753704
Coord C2 exon
chr17:52797419-52797546
Length
132 bp
Sequences
Splice sites
3' ss Seq
TATTTCTCTCACCTTTACAGGGG
3' ss Score
10.31
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ATAGCAACTTCATCCTGGCCAATGCCCAAGTGGCAAAGGGTTTCCCCATAGTCTACTGTTCAGATGGCTTCTGTGAGCTGGCCGGGTTTGCACGAACTGAAGTCATGCAGAAGAGCTGCAGCTGCAAGTTTTTGTTTGGGGTGGAGACCAACGAGCAGCTGATGCTTCAGATAGAAAAGTCCCTGGAGGAGAAAGTAGAATTCAAAGGAGAAATTATGTTCTACAAGAAGAATG
Seq A exon
GGGCTCCATTTTGGTGCCTGCTGGATATCGTTCCTATAAAGAATGAGAAAGGAGATGTAGTCCTTTTCCTGGCCTCATTCAAAGACATAACAGACACGAAAGTGAAGATTACATCAGAAGATAAAAAAGAAG
Seq C2 exon
ACAGAACCAAAGGAAGATCAAGAGCAGGGAGCCACTTTGACTCAGCCCGGAGACGGAGCCGAGCCGTCCTTTATCACATCTCAGGACACCTTCAAAGAAGAGAAAAGAACAAATTGAAAATAAATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035580-'1-3,'1-1,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.256
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(70.6=97.5)
A:
PF134261=PAS_9=PD(28.4=68.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGGCTTCTGTGAGCTGG
R:
ATGTGATAAAGGACGGCTCGG
Band lengths:
253-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types