DreEX0052476 @ danRer10
Exon Skipping
Gene
ENSDARG00000028900 | odf2a
Description
outer dense fiber of sperm tails 2a [Source:ZFIN;Acc:ZDB-GENE-091117-46]
Coordinates
chr21:13032751-13033771:+
Coord C1 exon
chr21:13032751-13032870
Coord A exon
chr21:13033370-13033474
Coord C2 exon
chr21:13033598-13033771
Length
105 bp
Sequences
Splice sites
3' ss Seq
GCATTTCTTTTATGTTCCAGGTT
3' ss Score
9.9
5' ss Seq
GATGTCAGT
5' ss Score
1.36
Exon sequences
Seq C1 exon
AAGAAATCAGTGAGAACAAGGTCCTCCTCCCCACCCCTGCATGTGCACGTGAACGAGAGCACACCTGTGCATGTTCATGTGAAGAAGAGCACGAAATGCAGCCCTACCAAGACAGCCCAG
Seq A exon
GTTAAGTCAAAAACTGGCTTGCATCCTACTGCTAAGGTGAAGACAAGAGTTCCATGGATTCCCCCTGGCAAGGTCTCAGCCCGAGAGACCTCATATAAGTGGGAT
Seq C2 exon
GGACCATCCCATCGTCTGGAAATAACGGCTCCACAGGAGCCTGAGCGTTCCCAGTCTCCTATGCGAATAGAAGATCTGTCCACCAATGAAGAAGAGGCACTGCATGGACGCATAAATCAGTACGAGAGGAAGATCGACAGTCTGATGACAGAGGTCAGCTCTCTGAAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028900-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.914 C2=0.724
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAACAAGGTCCTCCTCCC
R:
AGACTGTCGATCTTCCTCTCGT
Band lengths:
253-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]