HsaEX0044594 @ hg38
Exon Skipping
Gene
ENSG00000136811 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr9:128459567-128469470:+
Coord C1 exon
chr9:128459567-128459657
Coord A exon
chr9:128460942-128461067
Coord C2 exon
chr9:128469183-128469470
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGGTTTGTCCCTTTCCACAGAAA
3' ss Score
9.98
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTTTCCATCGTGTGGGAAGAACGGAGTAACGAGTCTCACGCAGAAAAAGGTCTTGAGAGCACCTTGTGGCGCACCCAGTGTAACTGTGACG
Seq A exon
AAATCTCACAAGCGAGGAATGAAAGGGGACACTGTGAATGTGCGGCGGAGTGTCCGGGTGAAAACCAAGGTACCTTGGATGCCCCCTGGAAAATCATCTGCCCGGCCTGTGGGATGCAAGTGGGAG
Seq C2 exon
AATCCACCTCATTGCCTGGAGATCACGCCACCATCTTCAGAAAAGCTGGTCTCAGTGATGCGGTTAAGTGACCTCTCTACAGAAGATGATGACTCAGGTCACTGTAAAATGAACCGTTATGATAAGAAGATTGATAGTCTAATGAATGCGGTTGGTTGTCTGAAGTCTGAGGTGAGGGAGGTAGGGGGCTGGGATAGCTACTACCCTGAGGATGTGCAGGAGCACCCAGGTGGATTTCCTGCCTGGTCCCTCAGCCTGCGTCTGCAGGCCTTCAGGCCTCCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136811_MULTIEX1-3/5=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.624 A=0.952 C2=0.617
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF104734=CENP-F_leu_zip=PU(27.5=43.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGTGTGGGAAGAACGGAG
R:
GACTTCAGACAACCAACCGCA
Band lengths:
253-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development