GgaEX6015070 @ galGal4
Exon Skipping
Gene
ENSGALG00000004767 | ODF2
Description
outer dense fiber protein 2 [Source:RefSeq peptide;Acc:NP_001012817]
Coordinates
chr17:5112583-5115213:+
Coord C1 exon
chr17:5112583-5112736
Coord A exon
chr17:5114162-5114287
Coord C2 exon
chr17:5115043-5115213
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTGTTTCTTTTTTAGCAA
3' ss Score
11.9
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTTTCCTTTCATTGTATTCTCCTTTCCCGTCTGCGGGAGAAGAGCCATGAAGAACCGTTCCTCATCTCCCCCTTTGCACGTCCATGTGGATGAAAACACCCCTGTCCATGTCCATATTAAAAAGGGTCAGAAAACCACACCTGCAAAATGCCAG
Seq A exon
CAAAAGCACAAACAGAAAATGAAAGGGAATACTGTGAACGTGCGCCGAGCAGTCCAGGTGAAAACAAAGGCCCCCTGGATGCCCCCAGGAAAAACATCTGTCCTTGATTCCACCTACAAATGGGAG
Seq C2 exon
GGACCAACTCACCGCCTGGAAATTACACCTCCAGAGTCCGAAAAGATGATGTCAGTATTGCGCCTGAGTGATCTCTCTACAGATGAGGAAGATGCAGTTTGCTGCAAAATGAATGAATACGAAAGGAAGATAGATAGCCTGATGAATGTGGTGGGAACACTAAAGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004767-'9-7,'9-6,15-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.474
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTCATCTCCCCCTTTGCA
R:
TTCCCACCACATTCATCAGGC
Band lengths:
254-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]