BtaEX0025320 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030567 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr11:99050165-99056055:+
Coord C1 exon
chr11:99050165-99050255
Coord A exon
chr11:99051434-99051502
Coord C2 exon
chr11:99055885-99056055
Length
69 bp
Sequences
Splice sites
3' ss Seq
GGGTTTGTCCCTTTCCACAGAAA
3' ss Score
9.98
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GTTTCCATCGTGTGGAAAGAACGGAGTAACGAGTCTCACGCAGAAAAAGGTCTTGAGGACACCTTGCGGCGCACCCAGTGTTACCGTGACG
Seq A exon
AAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTGCGGCGGAGTGTCCGGGTGAAAACCAAG
Seq C2 exon
AATCCACCTCACTGCCTGGAGATCACGCCACCATCTTCAGAAAAGCTGGTCTTTTGCACGCGGTTAAGTGACCTCTCTACAGAAGATGACGACTCCGGCCACTGTAAAATGAACCGTTACGATAAGAAGATTGACAGTTTAATGAACGCGGTTGGTTGTCTCAAGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030567_MULTIEX1-2/3=C1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.602 A=0.905 C2=0.211
Domain overlap (PFAM):
C1:
PF106014=zf-LITAF-like=FE(61.2=100)
A:
NO
C2:
PF104734=CENP-F_leu_zip=PU(26.9=43.9)
Main Skipping Isoform:
ENSBTAT00000020325fB4882
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTAACGAGTCTCACGCAG
R:
ATTTTACAGTGGCCGGAGTCG
Band lengths:
179-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development