RnoEX0062077 @ rn6
Exon Skipping
Gene
ENSRNOG00000014584 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:RGD Symbol;Acc:3229]
Coordinates
chr3:8452758-8464442:+
Coord C1 exon
chr3:8452758-8452848
Coord A exon
chr3:8454002-8454070
Coord C2 exon
chr3:8464272-8464442
Length
69 bp
Sequences
Splice sites
3' ss Seq
AGTTTTGTCCCTCTCCACAGAAA
3' ss Score
10.61
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GTTTCCATCGTGTGGGAAGAACGGAGTAACGAGTCTCACACAGAAAAAAGTCTTGAGAACACCTTGTGGCGCACCCAGTGTAACTGTGACG
Seq A exon
AAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTACGGCGGAGTGTCCGGGTGAAAACCAAG
Seq C2 exon
AATCCACCTCATTGCCTGGAGATCACACCACCATCTTCAGAAAAGCTGGTCTCGGTGATGCGATTGAGTGACCTTTCTACAGAAGACGACGATTCTGGTCACTGTAAGATGAACCGTTACGATAAGAAGATTGACAGTCTAATGAACGCGGTCGGTTGTCTCAAATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014584-'14-19,'14-15,17-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=0.972 C2=0.564
Domain overlap (PFAM):
C1:
PF106014=zf-LITAF-like=FE(60.0=100)
A:
NO
C2:
PF104734=CENP-F_leu_zip=PU(26.7=42.1)
Main Skipping Isoform:
ENSRNOT00000020407fB10051
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCCAGTGTAACTGTGACG
R:
AACCGACCGCGTTCATTAGAC
Band lengths:
178-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]