MmuEX6100123 @ mm9
Exon Skipping
Gene
ENSMUSG00000026790 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:MGI Symbol;Acc:MGI:1098824]
Coordinates
chr2:29748521-29756627:+
Coord C1 exon
chr2:29748521-29748674
Coord A exon
chr2:29748964-29749032
Coord C2 exon
chr2:29756597-29756627
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTCTAGTTTTGTCCCCACAGAAA
3' ss Score
8.43
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
ATCCATCTTTTTTGTGTTGCCCTCCCCTGCCTGCCAGAAGTGAACCATGAAGGACCGATCTTCAACTCCCCCCTTACATGTTCACGTGGATGAGAACACTCCTGTCCACGTCCACATAAAAAAACTCCCGAAACCGTCAGCAGCCAGCAGCCAG
Seq A exon
AAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTACGGCGGAGTGTCCGGGTGAAAACCAAG
Seq C2 exon
AATCCACCTCATTGCCTGGAGATCACACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026790-'8-25,'8-24,9-25=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.898 A=0.963 C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF104734=CENP-F_leu_zip=PU(26.9=43.1),PF0149614=V_ATPase_I=PU(17.3=46.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
ENSMUSP00000028128, ENSMUSP00000049272, ENSMUSP00000109384, ENSMUSP00000109385, ENSMUSP00000109387, ENSMUSP00000109388, ENSMUSP00000109388f6171A, ENSMUSP00000109391, ENSMUSP00000109392, ENSMUSP00000109393, ENSMUSP00000109394, ENSMUSP00000109395, ENSMUSP00000109396, ENSMUSP00000117628, ENSMUSP00000117887, ENSMUSP00000121207
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTGTGTTGCCCTCCCCTG
R:
TCTCCAGGCAATGAGGTGGAT
Band lengths:
168-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: