DreEX6050590 @ danRer10
Exon Skipping
Gene
ENSDARG00000020702 | odf2b
Description
outer dense fiber of sperm tails 2b [Source:ZFIN;Acc:ZDB-GENE-041008-119]
Coordinates
chr8:31007198-31008306:+
Coord C1 exon
chr8:31007198-31007364
Coord A exon
chr8:31007459-31007560
Coord C2 exon
chr8:31008142-31008306
Length
102 bp
Sequences
Splice sites
3' ss Seq
CACCATTACTGTGTTTTTAGCAG
3' ss Score
4.41
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
TTTCTGACACACATCTGGGACACTTTTTCATACCTGTAACTGTTTTAAGACCGTCTTACTAAAGTGAAGGGATGAAAACACGGTCGTCTTCTCCGCCCGTTCATGTTCATATCCCAGACTCCACATCTGTGCATGTTCACCTGAAGAAGAGCCCACAGAGGAGCCAG
Seq A exon
CAGGCAAAAGTGAGCAGTTTGCGATCCACTGCCAGTGTGAAGGTCCGAGCTCCATGGGTTCCTCCTGGAAAGAGCTCAACACGAAGACAGTACAAATGGGAG
Seq C2 exon
GGGGCTACTCGCTGCTTGGAGATCACTCCTGGACTCTCCTCTTCCTCACCTCCACTCCGGCTCACTGACCTGTCCAGTGAAGAAGAGGATCCAGGAGGAGCCATCAACAAATATGAGAGAAAACTCGAAAGCCTAATGTCGGAGGTTGACTGTTTAAAAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020702-'2-3,'2-1,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.794 C2=0.573
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF101864=Atg14=PU(41.8=69.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACACGGTCGTCTTCTCCG
R:
CAGTCAACCTCCGACATTAGGC
Band lengths:
245-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]