MmuEX6100123 @ mm10
Exon Skipping
Gene
ENSMUSG00000026790 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:MGI Symbol;Acc:MGI:1098824]
Coordinates
chr2:29893001-29901107:+
Coord C1 exon
chr2:29893001-29893154
Coord A exon
chr2:29893444-29893569
Coord C2 exon
chr2:29901077-29901107
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTCTAGTTTTGTCCCCACAGAAA
3' ss Score
8.43
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATCCATCTTTTTTGTGTTGCCCTCCCCTGCCTGCCAGAAGTGAACCATGAAGGACCGATCTTCAACTCCCCCCTTACATGTTCACGTGGATGAGAACACTCCTGTCCACGTCCACATAAAAAAACTCCCGAAACCGTCAGCAGCCAGCAGCCAG
Seq A exon
AAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTACGGCGGAGTGTCCGGGTGAAAACCAAGGTACCTTGGATGCCCCCTGGAAAATCATCTGCCCGGCATGTGGGATGCAAGTGGGAG
Seq C2 exon
AATCCACCTCATTGCCTGGAGATCACACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026790-'18-27,'18-24,21-27
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.932 A=0.945 C2=0.617
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF104734=CENP-F_leu_zip=PU(27.5=43.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTGTGTTGCCCTCCCCTG
R:
GATCTCCAGGCAATGAGGTGG
Band lengths:
170-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types