HsaEX0044599 @ hg38
Exon Skipping
Gene
ENSG00000136811 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr9:128460942-128471468:+
Coord C1 exon
chr9:128460942-128461067
Coord A exon
chr9:128469183-128469353
Coord C2 exon
chr9:128471308-128471468
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCTCCTCTACATCAGAAT
3' ss Score
6.38
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AAATCTCACAAGCGAGGAATGAAAGGGGACACTGTGAATGTGCGGCGGAGTGTCCGGGTGAAAACCAAGGTACCTTGGATGCCCCCTGGAAAATCATCTGCCCGGCCTGTGGGATGCAAGTGGGAG
Seq A exon
AATCCACCTCATTGCCTGGAGATCACGCCACCATCTTCAGAAAAGCTGGTCTCAGTGATGCGGTTAAGTGACCTCTCTACAGAAGATGATGACTCAGGTCACTGTAAAATGAACCGTTATGATAAGAAGATTGATAGTCTAATGAATGCGGTTGGTTGTCTGAAGTCTGAG
Seq C2 exon
GTCAAGATGCAAAAAGGTGAGCGCCAGATGGCCAAAAGGTTCCTGGAGGAACGGAAGGAAGAGCTGGAGGAGGTGGCCCACGAACTGGCTGAGACTGAGCACGAGAACACGGTGTTGAGGCACAACATCGAGCGCATGAAGGAGGAGAAGGACTTCACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136811_MULTIEX1-4/5=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.952 A=0.618 C2=0.745
Domain overlap (PFAM):
C1:
NO
A:
PF104734=CENP-F_leu_zip=PU(27.5=43.9)
C2:
PF104734=CENP-F_leu_zip=FE(58.2=100)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGGACACTGTGAATGTGC
R:
CTCCTTCATGCGCTCGATGTT
Band lengths:
248-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development